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Journal Articles
- 2024
[j15]Gabin Drouard
, Juha Mykkänen, Jarkko Heiskanen, Joona Pohjonen, Saku Ruohonen, Katja Pahkala, Terho Lehtimäki, Xiaoling Wang, Miina Ollikainen, Samuli Ripatti, Matti Pirinen, Olli T. Raitakari, Jaakko Kaprio:
Exploring machine learning strategies for predicting cardiovascular disease risk factors from multi-omic data. BMC Medical Informatics Decis. Mak. 24(1): 116 (2024)- 2023
- [j14]Matti Pirinen:
linemodels: clustering effects based on linear relationships. Bioinform. 39(3) (2023) - 2021
- [j13]Rasheed Omobolaji Alabi, Omar Youssef, Matti Pirinen, Mohammed Elmusrati, Antti A. Mäkitie, Ilmo Leivo, Alhadi Almangush:
Machine learning in oral squamous cell carcinoma: Current status, clinical concerns and prospects for future - A systematic review. Artif. Intell. Medicine 115: 102060 (2021) - [j12]Rasheed Omobolaji Alabi, Antti A. Mäkitie, Matti Pirinen, Mohammed Elmusrati, Ilmo Leivo, Alhadi Almangush:
Comparison of nomogram with machine learning techniques for prediction of overall survival in patients with tongue cancer. Int. J. Medical Informatics 145: 104313 (2021) - 2017
- [j11]Matti Pirinen, Christian Benner, Pekka Marttinen, Marjo-Riitta Järvelin, Manuel A. Rivas, Samuli Ripatti:
biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements. Bioinform. 33(15): 2405-2407 (2017) - 2016
- [j10]Christian Benner, Chris C. A. Spencer, Aki S. Havulinna, Veikko Salomaa, Samuli Ripatti, Matti Pirinen:
FINEMAP: efficient variable selection using summary data from genome-wide association studies. Bioinform. 32(10): 1493-1501 (2016) - [j9]Anna Cichonska, Juho Rousu, Pekka Marttinen, Antti J. Kangas, Pasi Soininen, Terho Lehtimäki, Olli T. Raitakari, Marjo-Riitta Järvelin, Veikko Salomaa, Mika Ala-Korpela, Samuli Ripatti, Matti Pirinen:
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis. Bioinform. 32(13): 1981-1989 (2016) - [j8]Jussi Gillberg, Pekka Marttinen, Matti Pirinen, Antti J. Kangas, Pasi Soininen, Mehreen Ali, Aki S. Havulinna, Marjo-Riitta Järvelin, Mika Ala-Korpela, Samuel Kaski:
Multiple Output Regression with Latent Noise. J. Mach. Learn. Res. 17: 122:1-122:35 (2016) - 2015
- [j7]Matti Pirinen, Tuuli Lappalainen, Noah A. Zaitlen, Emmanouil T. Dermitzakis, Peter Donnelly, Mark I. McCarthy, Manuel A. Rivas:
Assessing allele-specific expression across multiple tissues from RNA-seq read data. Bioinform. 31(15): 2497-2504 (2015) - 2014
- [j6]Pekka Marttinen, Matti Pirinen, Antti-Pekka Sarin, Jussi Gillberg, Johannes Kettunen, Ida Surakka, Antti J. Kangas, Pasi Soininen, Paul F. O'Reilly, Marika Kaakinen, Mika Kähönen, Terho Lehtimäki, Mika Ala-Korpela, Olli T. Raitakari, Veikko Salomaa, Marjo-Riitta Järvelin, Samuli Ripatti, Samuel Kaski:
Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression. Bioinform. 30(14): 2026-2034 (2014) - 2013
- [j5]Manuel A. Rivas, Matti Pirinen, Matthew J. Neville, Kyle J. Gaulton, Loukas Moutsianas, Cecilia M. Lindgren, Fredrik Karpe, Mark I. McCarthy, Peter Donnelly:
Assessing association between protein truncating variants and quantitative traits. Bioinform. 29(19): 2419-2426 (2013) - 2011
- [j4]Dario Gasbarra, Sangita Kulathinal, Matti Pirinen, Mikko J. Sillanpää:
Estimating Haplotype Frequencies by Combining Data from Large DNA Pools with Database Information. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 36-44 (2011) - 2009
- [j3]Matti Pirinen:
Estimating population haplotype frequencies from pooled SNP data using incomplete database information. Bioinform. 25(24): 3296-3302 (2009) - 2007
- [j2]Dario Gasbarra, Matti Pirinen, Mikko J. Sillanpää, Elja Arjas:
Estimating genealogies from linked marker data: a Bayesian approach. BMC Bioinform. 8 (2007) - 2006
- [j1]Matti Pirinen, Dario Gasbarra:
Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees. IEEE ACM Trans. Comput. Biol. Bioinform. 3(3): 252-262 (2006)
Conference and Workshop Papers
- 2018
- [c1]Kalle Parn, Matti Pirinen, Mart Kals, Reedik Mägi, Veikko Salomaa, Michael Boehnke, Ira Hall, Nathan Stitziel, Nelson Freimer, Mark J. Daly, Aarno Palotie, Samuli Ripatti, Priit Palta:
Differences in the Commonly used Genotype Imputation Algorithms and Their Imputation Accuracy Estimates. eScience 2018: 293-294
Informal and Other Publications
- 2013
- [i1]Jussi Gillberg, Pekka Marttinen, Matti Pirinen, Antti J. Kangas, Pasi Soininen, Marjo-Riitta Järvelin, Mika Ala-Korpela, Samuel Kaski:
Bayesian Information Sharing Between Noise And Regression Models Improves Prediction of Weak Effects. CoRR abs/1310.4362 (2013)
Coauthor Index
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