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2020 – today
- 2024
[j18]Matthew C. Perrone
, Michael G. Lerner, Matthew Dunworth, Andrew J. Ewald, Joel S. Bader:
Prioritizing drug targets by perturbing biological network response functions. PLoS Comput. Biol. 20(6): 1012195 (2024)- 2023
- [j17]Jitong Cai, Jianan Zhan, Dan E. Arking, Joel S. Bader:
Priors, population sizes, and power in genome-wide hypothesis tests. BMC Bioinform. 24(1): 170 (2023) - 2020
- [j16]Zaki Hasnain, Andrew K. Fraser, Dan Georgess, Alex Choi, Paul Macklin, Joel S. Bader, Shelly R. Peyton, Andrew J. Ewald, Paul K. Newton:
OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics. Bioinform. 36(10): 3292-3294 (2020) - [j15]Veena Padmanaban, Yohannes Tsehay, Kevin J. Cheung, Andrew J. Ewald, Joel S. Bader:
Between-tumor and within-tumor heterogeneity in invasive potential. PLoS Comput. Biol. 16(1) (2020)
2010 – 2019
- 2016
- [j14]Kun Yang, Giovanni Stracquadanio, Jingchuan Luo, Jef D. Boeke, Joel S. Bader:
BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts. Bioinform. 32(6): 937-939 (2016) - [j13]Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader:
BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinform. 32(22): 3519-3521 (2016) - 2013
- [c6]Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader:
Session Introduction. Pacific Symposium on Biocomputing 2013: 103-110 - 2012
- [j12]Yongjin Park, Joel S. Bader:
How networks change with time. Bioinform. 28(12): 40-48 (2012) - [c5]Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader:
Session Introduction. Pacific Symposium on Biocomputing 2012: 1-6 - [c4]Faris Alqadah, Joel S. Bader, Rajul Anand, Chandan K. Reddy:
Query-based Biclustering using Formal Concept Analysis. SDM 2012: 648-659 - 2011
- [j11]Yongjin Park, Joel S. Bader:
Resolving the structure of interactomes with hierarchical agglomerative clustering. BMC Bioinform. 12(S-1): S44 (2011) - 2010
- [j10]Corban G. Rivera, Rachit Vakil, Joel S. Bader:
NeMo: Network Module identification in Cytoscape. BMC Bioinform. 11(S-1): 61 (2010) - [j9]Balaji Veeramani, Joel S. Bader:
Predicting functional associations from metabolism using bi-partite network algorithms. BMC Syst. Biol. 4: 95 (2010)
2000 – 2009
- 2009
- [j8]Hailiang Huang, Joel S. Bader:
Precision and recall estimates for two-hybrid screens. Bioinform. 25(3): 372-378 (2009) - [j7]Carmen Kut, Vahid Golkhou, Joel S. Bader:
Analytical approximations for the amplitude and period of a relaxation oscillator. BMC Syst. Biol. 3: 6 (2009) - [j6]Balaji Veeramani, Joel S. Bader:
Metabolic Flux Correlations, Genetic Interactions, and Disease. J. Comput. Biol. 16(2): 291-302 (2009) - [c3]Sarah M. Richardson, Brian S. Olson, Jessica S. Dymond, Randal C. Burns, Srinivasan Chandrasegaran, Jef D. Boeke, Amarda Shehu, Joel S. Bader:
Automated Design of Assemblable, Modular, Synthetic Chromosomes. PPAM (2) 2009: 280-289 - 2007
- [j5]Hailiang Huang, Bruno Jedynak, Joel S. Bader:
Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps. PLoS Comput. Biol. 3(11) (2007) - [c2]L. Angela Liu, Joel S. Bader:
Ab initio Prediction of Transcription Factor Binding Sites. Pacific Symposium on Biocomputing 2007: 484-495 - 2006
- [c1]Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader:
Probabilistic Paths for Protein Complex Inference. Systems Biology and Computational Proteomics 2006: 14-28 - 2005
- [j4]Ping Ye, Brian D. Peyser, Forrest A. Spencer, Joel S. Bader:
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast. BMC Bioinform. 6: 270 (2005) - [j3]Yan Qi, Ping Ye, Joel S. Bader:
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality. BMC Bioinform. 6: 288 (2005) - 2004
- [j2]Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky:
Probabilistic inference of molecular networks from noisy data sources. Bioinform. 20(8): 1205-1213 (2004) - 2003
- [j1]Joel S. Bader:
Greedily building protein networks with confidence. Bioinform. 19(15): 1869-1874 (2003)
Coauthor Index
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