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ORCIDRaffaele A. Calogero
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- affiliation: University of Turin, Bioinformatics and Genomics Unit, Italy
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Journal Articles
- 2024
[j21]Simone Alessandri, Maria L. Ratto
, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandrì:
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications. BMC Bioinform. 25(1): 110 (2024)- 2023
- [j20]Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Francesco Sassi, Luca Alessandrì, Dora Tortarolo, Raffaele A. Calogero, Livio Trusolino, Andrea Bertotti, Marco Beccuti, Martina Olivero, Francesca Cordero:
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system. Bioinform. 39(5) (2023) - 2021
- [j19]Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandrì, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli:
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. 22-S(15): 544 (2021) - 2019
- [j18]Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero:
A computational approach based on the colored Petri net formalism for studying multiple sclerosis. BMC Bioinform. 20-S(6): 623 (2019) - [j17]Francesca Cordero, Raffaele A. Calogero, Michele Caselle:
BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 20-S(9): 562:1-562:4 (2019) - 2018
- [j16]Marco Beccuti, Francesca Cordero, Maddalena Arigoni, Riccardo Panero, Elvio Gilberto Amparore, Susanna Donatelli, Raffaele A. Calogero:
SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer. Bioinform. 34(5): 871-872 (2018) - [j15]Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero:
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines. BMC Bioinform. 19-S(10): 211-219 (2018) - 2017
- [j14]Marco Beccuti, Elisa Genuardi, Greta Romano, Luigia Monitillo, Daniela Barbero, Mario Boccadoro, Marco Ladetto, Raffaele A. Calogero, Simone Ferrero, Francesca Cordero:
HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data. BMC Bioinform. 18(1): 516 (2017) - 2015
- [j13]Matteo Carrara, Josephine Lum, Francesca Cordero, Marco Beccuti, Michael Poidinger, Susanna Donatelli, Raffaele A. Calogero, Francesca Zolezzi:
Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis. BMC Bioinform. 16(S-9): S2 (2015) - [j12]Chiara Fornari, Gianfranco Balbo, Sami M. Halawani, Omar M. Ba-Rukab, Ab Rahman Ahmad, Raffaele A. Calogero, Francesca Cordero, Marco Beccuti:
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression. BMC Syst. Biol. 9(S-3): S1 (2015) - 2014
- [j11]Marco Beccuti, Matteo Carrara, Francesca Cordero, Fulvio Lazzarato, Susanna Donatelli, Francesca Nadalin, Alberto Policriti, Raffaele A. Calogero:
Chimera: a Bioconductor package for secondary analysis of fusion products. Bioinform. 30(24): 3556-3557 (2014) - 2013
- [j10]Francesca Cordero, Marco Beccuti, Chiara Fornari, Stefania Lanzardo, Laura Conti, Federica Cavallo, Gianfranco Balbo, Raffaele A. Calogero:
Multi-level model for the investigation of oncoantigen-driven vaccination effect. BMC Bioinform. 14(S-6): S11 (2013) - [j9]Matteo Carrara, Marco Beccuti, Federica Cavallo, Susanna Donatelli, Fulvio Lazzarato, Francesca Cordero, Raffaele A. Calogero:
State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues? BMC Bioinform. 14(S-7): S2 (2013) - 2007
- [j8]Remo Sanges, Francesca Cordero, Raffaele A. Calogero:
oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language. Bioinform. 23(24): 3406-3408 (2007) - [j7]Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele A. Calogero, Antonella Isacchi:
Cross platform microarray analysis for robust identification of differentially expressed genes. BMC Bioinform. 8(S-1) (2007) - [j6]Daniela Bianchi, Raffaele A. Calogero, Brunello Tirozzi:
Kohonen neural networks and genetic classification. Math. Comput. Model. 45(1-2): 34-60 (2007) - 2005
- [j5]Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pierluigi Lollini, Guido Forni, Raffaele A. Calogero:
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention. BMC Bioinform. 6(S-4) (2005) - 2004
- [j4]Fulvio Lazzarato, Giuliana Franceschinis, Marco Botta, Francesca Cordero, Raffaele A. Calogero:
RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets. Bioinform. 20(16): 2848-2850 (2004) - [j3]Maria Carmela Accardo, Ennio Giordano, Sara Riccardo, Filomena Anna Digilio, Giovanni Iazzetti, Raffaele A. Calogero, Maria Furia:
A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome. Bioinform. 20(18): 3293-3301 (2004) - 1998
- [j2]Giovanni Iazzetti, Maria Luisa Chiusano, Raffaele A. Calogero:
STRIRED: graphical analysis of string repeats. Bioinform. 14(2): 221-222 (1998) - [j1]Giovanni Iazzetti, G. Santini, M. Rau, E. Bucci, Raffaele A. Calogero:
VIRTLAB: a virtual molecular biology laboratory. Bioinform. 14(9): 815-816 (1998)
Conference and Workshop Papers
- 2019
- [c7]Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero:
Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions. CIBB 2019: 299-308 - 2018
- [c6]Greta Romano, Elisa Genuardi, Raffaele A. Calogero, Simone Ferrero:
ParallelHashClone: A Parallel Implementation of HashClone Suite for Clonality Assessment from NGS Data. PDP 2018: 415-422 - 2012
- [c5]Matteo Carrara, Federica Cavallo, Maddalena Arigoni, Raffaele A. Calogero:
Digging in the RNA-seq Garbage: Evaluating the Characteristics of Unmapped RNA-seq Reads in Normal Tissues. CISIS 2012: 588-591 - 2011
- [c4]Francesca Cordero, Stefania Lanzardo, Maddalena Arigoni, Chiara Fornari, Laura Conti, Gianfranco Balbo, Federica Cavallo, Daniele Manini, Raffaele A. Calogero:
Cancer stem cell based adjuvant for oncoantingen-driven vaccination. BCB 2011: 564-568 - [c3]Chiara Fornari, Francesca Cordero, Daniele Manini, Gianfranco Balbo, Raffaele A. Calogero:
Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models. CS2Bio@DisCoTec 2011: 29-39 - 2010
- [c2]Alessia Visconti, Francesca Cordero, Marco Botta, Raffaele A. Calogero:
Gene Ontology Rewritten for Computing Gene Functional Similarity. CISIS 2010: 694-699 - 2009
- [c1]Silvia C. Lenzken, Silvia Vivarelli, Francesca Zolezzi, Francesca Cordero, Cristina Della Beffa, Raffaele A. Calogero, Silvia Barabino:
Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS). CISIS 2009: 795-799
Informal and Other Publications
- 2020
- [i1]Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero:
Multiple Sclerosis disease: a computational approach for investigating its drug interactions. CoRR abs/2006.00813 (2020)
Coauthor Index
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