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ORCIDCalvin Yu-Chian Chen
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2020 – today
- 2025
[j33]Haohuai He
, Guanxing Chen, Zhenchao Tang, Calvin Yu-Chian Chen:
Dual modality feature fused neural network integrating binding site information for drug target affinity prediction. npj Digit. Medicine 8(1) (2025)- 2024
- [j32]Guanxing Chen, Haohuai He, Calvin Yu-Chian Chen:
MFAE: Multilevel Feature Aggregation Enhanced Drug-Target Affinity Prediction for Drug Repurposing Against Colorectal Cancer. Adv. Intell. Syst. 6(3) (2024) - [j31]Jiehui Huang, Lishan Lin, Fengcheng Yu, Xuedong He, Wenhui Song, Jiaying Lin, Zhenchao Tang, Kang Yuan, Yucheng Li, Haofan Huang, Zhong Pei, Wenbiao Xian, Calvin Yu-Chian Chen:
Parkinson's severity diagnosis explainable model based on 3D multi-head attention residual network. Comput. Biol. Medicine 170: 107959 (2024) - [j30]Haohuai He, Guanxing Chen, Calvin Yu-Chian Chen:
Integrating sequence and graph information for enhanced drug-target affinity prediction. Sci. China Inf. Sci. 67(2) (2024) - [j29]Guanxing Chen, Haohuai He, Lu Zhao, Qiujie Lv, Calvin Yu-Chian Chen:
GINCM-DTA: A graph isomorphic network with protein contact map representation for potential use against COVID-19 and Omicron subvariants BQ.1, BQ.1.1, XBB.1.5, XBB.1.16. Expert Syst. Appl. 236: 121274 (2024) - [j28]Jiehui Huang, Zhenchao Tang, Xuedong He, Jun Zhou, Defeng Zhou, Calvin Yu-Chian Chen:
Progressive network based on detail scaling and texture extraction: A more general framework for image deraining. Neurocomputing 568: 127066 (2024) - [j27]Lu Zhao, Zhuojian Li, Guanxing Chen, Yiyang Yin, Calvin Yu-Chian Chen:
Multi-perspective neural network for dual drug repurposing in Alzheimer's disease. Knowl. Based Syst. 283: 111195 (2024) - [j26]Jiehui Huang, Jun Zhou, Zhenchao Tang, Jiaying Lin, Calvin Yu-Chian Chen:
TMBL: Transformer-based multimodal binding learning model for multimodal sentiment analysis. Knowl. Based Syst. 285: 111346 (2024) - [j25]Shouzhi Chen, Zhenchao Tang, Linlin You, Calvin Yu-Chian Chen:
A knowledge distillation-guided equivariant graph neural network for improving protein interaction site prediction performance. Knowl. Based Syst. 300: 112209 (2024) - [j24]Yiyang Yin, Shuangling Luo, Jun Zhou, Liang Kang, Calvin Yu-Chian Chen:
LDCNet: Lightweight dynamic convolution network for laparoscopic procedures image segmentation. Neural Networks 170: 441-452 (2024) - [j23]Ziduo Yang, Weihe Zhong, Qiujie Lv, Tiejun Dong, Guanxing Chen, Calvin Yu-Chian Chen:
Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions From 3D Structures. IEEE Trans. Pattern Anal. Mach. Intell. 46(12): 8191-8208 (2024) - [j22]Zhenchao Tang, Guanxing Chen, Hualin Yang, Weihe Zhong, Calvin Yu-Chian Chen:
DSIL-DDI: A Domain-Invariant Substructure Interaction Learning for Generalizable Drug-Drug Interaction Prediction. IEEE Trans. Neural Networks Learn. Syst. 35(8): 10552-10560 (2024) - [j21]Qiujie Lv, Guanxing Chen, Ziduo Yang, Weihe Zhong, Calvin Yu-Chian Chen:
Meta Learning With Graph Attention Networks for Low-Data Drug Discovery. IEEE Trans. Neural Networks Learn. Syst. 35(8): 11218-11230 (2024) - [c13]Zhenchao Tang, Jiehui Huang, Guanxing Chen, Calvin Yu-Chian Chen:
Comprehensive View Embedding Learning for Single-Cell Multimodal Integration. AAAI 2024: 15292-15300 - [i4]Liuzhenghao Lv, Zongying Lin, Hao Li, Yuyang Liu, Jiaxi Cui, Calvin Yu-Chian Chen, Li Yuan, Yonghong Tian:
ProLLaMA: A Protein Large Language Model for Multi-Task Protein Language Processing. CoRR abs/2402.16445 (2024) - 2023
- [j20]Xuedong He, Calvin Yu-Chian Chen:
Enhancing discriminative appearance model for visual tracking. Expert Syst. Appl. 219: 119670 (2023) - [j19]Xuedong He, Lu Zhao, Calvin Yu-Chian Chen:
Variable scale learning for visual object tracking. J. Ambient Intell. Humaniz. Comput. 14(4): 3315-3330 (2023) - [j18]Xuedong He, Calvin Yu-Chian Chen:
Attention fusion and target-uncertain detection for discriminative tracking. Knowl. Based Syst. 278: 110860 (2023) - [j17]Qiujie Lv, Jun Zhou, Ziduo Yang, Haohuai He, Calvin Yu-Chian Chen:
3D graph neural network with few-shot learning for predicting drug-drug interactions in scaffold-based cold start scenario. Neural Networks 165: 94-105 (2023) - [c12]Zhenchao Tang, Hualin Yang, Calvin Yu-Chian Chen:
Weakly Supervised Posture Mining for Fine-Grained Classification. CVPR 2023: 23735-23744 - [c11]Wei Zeng, Mengtang Li, Calvin Yu-Chian Chen:
DEGAT: A Graph Neural Network Algorithm Based on Dynamic Attention Mechanism for Molecular Property Prediction. ICBET 2023: 63-67 - [i3]Ziduo Yang, Xian Wang, Yifan Li, Qiujie Lv, Calvin Yu-Chian Chen, Lei Shen:
Lightweight equivariant interaction graph neural network for accurate and efficient interatomic potential and force predictions. CoRR abs/2311.02869 (2023) - [i2]Guian Fang, Mengsha Liu, Yi Zhong, Zhuolin Zhang, Jiehui Huang, Zhenchao Tang, Calvin Yu-Chian Chen:
Multimodal Identification of Alzheimer's Disease: A Review. CoRR abs/2311.12842 (2023) - 2022
- [j16]Weining Yuan, Guanxing Chen, Calvin Yu-Chian Chen:
FusionDTA: attention-based feature polymerizer and knowledge distillation for drug-target binding affinity prediction. Briefings Bioinform. 23(1) (2022) - [j15]Haohuai He, Guanxing Chen, Calvin Yu-Chian Chen:
3DGT-DDI: 3D graph and text based neural network for drug-drug interaction prediction. Briefings Bioinform. 23(3) (2022) - [j14]Xuedong He, Calvin Yu-Chian Chen:
Learning object-uncertainty policy for visual tracking. Inf. Sci. 582: 60-72 (2022) - [j13]Xuedong He, Calvin Yu-Chian Chen:
Exploring reliable visual tracking via target embedding network. Knowl. Based Syst. 244: 108584 (2022) - [j12]Guanxing Chen, Xuefei Jiang, Qiujie Lv, Xiaojun Tan, Zihuan Yang, Calvin Yu-Chian Chen:
VAERHNN: Voting-averaged ensemble regression and hybrid neural network to investigate potent leads against colorectal cancer. Knowl. Based Syst. 257: 109925 (2022) - [j11]Jun Zhou, Qiujie Lv, Calvin Yu-Chian Chen:
Dynamic concept-aware network for few-shot learning. Knowl. Based Syst. 258: 110045 (2022) - [j10]Zhenchao Tang, Calvin Yu-Chian Chen, Chengzhen Jiang, Dongying Zhang, Weiran Luo, Zhiming Hong, Huaiwei Sun:
Capsule-Encoder-Decoder: A Method for Generalizable Building Extraction from Remote Sensing Images. Remote. Sens. 14(5): 1235 (2022) - 2021
- [j9]Qiujie Lv, Guanxing Chen, Lu Zhao, Weihe Zhong, Calvin Yu-Chian Chen:
Mol2Context-vec: learning molecular representation from context awareness for drug discovery. Briefings Bioinform. 22(6) (2021) - [j8]Jianqiang Chen, Yali Zhang, Xiang Hu, Calvin Yu-Chian Chen:
Cascading residual-residual attention generative adversarial network for image super resolution. Soft Comput. 25(14): 9651-9662 (2021) - [j7]Ziduo Yang, Lu Zhao, Shuyu Wu, Calvin Yu-Chian Chen:
Lung Lesion Localization of COVID-19 From Chest CT Image: A Novel Weakly Supervised Learning Method. IEEE J. Biomed. Health Informatics 25(6): 1864-1872 (2021) - [i1]Yichao Zhou, Chelsea Ju, J. Harry Caufield, Kevin Shih, Calvin Yu-Chian Chen, Yizhou Sun, Kai-Wei Chang, Peipei Ping, Wei Wang:
Clinical Named Entity Recognition using Contextualized Token Representations. CoRR abs/2106.12608 (2021) - 2020
- [j6]Leping Deng, Weihe Zhong, Lu Zhao, Xuedong He, Zongkai Lian, Shancheng Jiang, Calvin Yu-Chian Chen:
Artificial Intelligence-Based Application to Explore Inhibitors of Neurodegenerative Diseases. Frontiers Neurorobotics 14: 617327 (2020)
2010 – 2019
- 2019
- [j5]Hsin-Yi Chen, Jian-Qiang Chen, Jun-Yan Li, Hung-Jin Huang, Xi Chen, Hao-Ying Zhang, Calvin Yu-Chian Chen:
Deep Learning and Random Forest Approach for Finding the Optimal Traditional Chinese Medicine Formula for Treatment of Alzheimer's Disease. J. Chem. Inf. Model. 59(4): 1605-1623 (2019) - 2017
- [j4]Hsin-Chieh Tang, Hung-Jin Huang, Cheng-Chun Lee, Calvin Yu-Chian Chen:
Network pharmacology-based approach of novel traditional Chinese medicine formula for treatment of acute skin inflammation in silico. Comput. Biol. Chem. 71: 70-81 (2017) - 2011
- [j3]Tsung-Ying Tsai, Kai-Wei Chang, Calvin Yu-Chian Chen:
iScreen: world's first cloud-computing web server for virtual screening and de novo drug design based on TCM database@Taiwan. J. Comput. Aided Mol. Des. 25(6): 525-531 (2011) - [j2]Shun-Chieh Yang, Su-Sen Chang, Hsin-Yi Chen, Calvin Yu-Chian Chen:
Identification of Potent EGFR Inhibitors from TCM Database@Taiwan. PLoS Comput. Biol. 7(10) (2011) - [j1]Su-Sen Chang, Hung-Jin Huang, Calvin Yu-Chian Chen:
Two Birds with One Stone? Possible Dual-Targeting H1N1 Inhibitors from Traditional Chinese Medicine. PLoS Comput. Biol. 7(12) (2011)
2000 – 2009
- 2009
- [c10]Yea-Huey Chang, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Chien-Yu Chen, Hung-Jin Huang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Reducing without Side Effects? A Novel Strategy for Designing the PPAR Agonists. BMEI 2009: 1-4 - [c9]Chien-Yu Chen, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Hung-Jin Huang, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Could Traditional Chinese Medicine Used for Curing Erectile Dysfunction? BMEI 2009: 1-5 - [c8]Chien-Yu Chen, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Hung-Jin Huang, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Drug Design for AMP-Activated Protein Kinase Agonists in Silico. BMEI 2009: 1-4 - [c7]Chien-Yu Chen, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Hung-Jin Huang, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Drug Design for KU86 in DNA Break Repair System. BMEI 2009: 1-4 - [c6]Chien-Yu Chen, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Hung-Jin Huang, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Drug Design for the Influenza A Virus Subtype H1N1. BMEI 2009: 1-3 - [c5]Chien-Yu Chen, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Hung-Jin Huang, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Is that Possible to Design the Versatile Inhibitors for H1N1, H5N1, H5N2, and H5N7? BMEI 2009: 1-4 - [c4]Chien-Yu Chen, Fuu-Jen Tsai, Jing-Gung Chung, Chang-Hai Tsai, Yuan-Man Hsu, Hung-Jin Huang, Tin-Yun Ho, Yea-Huey Chang, Da-Tian Bau, Ming-Hsui Tsai, Calvin Yu-Chian Chen:
A Novel Strategy for Designing Dual-Target Inhibitors of KU86 and XRCC4. BMEI 2009: 1-4 - [c3]Hung-Jin Huang, Da-Tian Bau, Ming-Hsui Tsai, Yuan-Man Hsu, Tin-Yun Ho, Chien-Yu Chen, Yea-Huey Chang, Fuu-Jen Tsai, Chang-Hai Tsai, Calvin Yu-Chian Chen:
Dual-Targeted Drug Design of HER2 and HSP90 by CoMFA Model and Pharmacophore Analysis. BMEI 2009: 1-5 - [c2]Hung-Jin Huang, Fuu-Jen Tsai, Jing-Gung Chung, Chang-Hai Tsai, Yuan-Man Hsu, Tin-Yun Ho, Yea-Huey Chang, Da-Tian Bau, Ming-Hsui Tsai, Calvin Yu-Chian Chen:
Drug Design for XRCC4 in Silico. BMEI 2009: 1-4 - 2008
- [c1]Winston Yu-Chen Chen, Po-Yuan Chen, Calvin Yu-Chian Chen, Jing-Gung Chung:
Exploring 3D-QSAR pharmacophore mapping of azaphenanthrenone derivatives for mPGES-1 inhibition Using HypoGen technique. CIBCB 2008: 207-213
Coauthor Index
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