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Ovidiu Radulescu
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2020 – today
- 2024
- [j25]Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm:
Reduction of Chemical Reaction Networks with Approximate Conservation Laws. SIAM J. Appl. Dyn. Syst. 23(1): 256-296 (2024) - [j24]Aurélien Desoeuvres, Alexandru Iosif, Christoph Lüders, Ovidiu Radulescu, Hamid Rahkooy, Matthias Seiß, Thomas Sturm:
A Computational Approach to Polynomial Conservation Laws. SIAM J. Appl. Dyn. Syst. 23(1): 813-854 (2024) - [j23]Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas:
A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics. Theor. Comput. Sci. 983: 114294 (2024) - 2023
- [i7]Eléa Thibault Greugny, François Fages, Ovidiu Radulescu, Peter Szmolyan, Georgios N. Stamatas:
A Skin Microbiome Model with AMP interactions and Analysis of Quasi-Stability vs Stability in Population Dynamics. CoRR abs/2310.15201 (2023) - 2022
- [c17]Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu:
Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. CMSB 2022: 61-85 - [i6]Christoph Lüders, Thomas Sturm, Ovidiu Radulescu:
ODEbase: A Repository of ODE Systems for Systems Biology. CoRR abs/2201.08980 (2022) - [i5]Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu:
Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations. CoRR abs/2205.07360 (2022) - 2021
- [j22]Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher:
Algorithmic Reduction of Biological Networks with Multiple Time Scales. Math. Comput. Sci. 15(3): 499-534 (2021) - [j21]Guilherme C. P. Innocentini, Arran Hodgkinson, Fernando Antoneli, Arnaud Debussche, Ovidiu Radulescu:
Push-forward method for piecewise deterministic biochemical simulations. Theor. Comput. Sci. 893: 17-40 (2021) - [c16]Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Yu. Zinovyev, Ovidiu Radulescu:
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. CMSB 2021: 238-244 - 2020
- [j20]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
Identifying the parametric occurrence of multiple steady states for some biological networks. J. Symb. Comput. 98: 84-119 (2020) - [c15]Ovidiu Radulescu:
Tropical Geometry of Biological Systems (Invited Talk). CASC 2020: 1-13 - [c14]Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm:
A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks. CASC 2020: 492-509 - [c13]Aurélien Desoeuvres, Gilles Trombettoni, Ovidiu Radulescu:
Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity. CMSB 2020: 79-101 - [i4]Niclas Kruff, Christoph Lüders, Ovidiu Radulescu, Thomas Sturm, Sebastian Walcher:
Algorithmic Reduction of Biological Networks With Multiple Time Scales. CoRR abs/2010.10129 (2020)
2010 – 2019
- 2019
- [j19]Kenneth Barr, John Reinitz, Ovidiu Radulescu:
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput. Biol. 15(11) (2019) - [c12]Guilherme C. P. Innocentini, Fernando Antoneli, Arran Hodgkinson, Ovidiu Radulescu:
Effective Computational Methods for Hybrid Stochastic Gene Networks. CMSB 2019: 60-77 - [p1]Satya Swarup Samal, Jeyashree Krishnan, Ali Hadizadeh Esfahani, Christoph Lüders, Andreas Weber, Ovidiu Radulescu:
Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine. Automated Reasoning for Systems Biology and Medicine 2019: 269-295 - [i3]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
Identifying the Parametric Occurrence of Multiple Steady States for some Biological Networks. CoRR abs/1902.04882 (2019) - 2018
- [j18]François Boulier, François Fages, Ovidiu Radulescu, Satya Swarup Samal, Andreas Schuppert, Werner M. Seiler, Thomas Sturm, Sebastian Walcher, Andreas Weber:
The SYMBIONT project: symbolic methods for biological networks. ACM Commun. Comput. Algebra 52(3): 67-70 (2018) - 2017
- [j17]Satya Swarup Samal, Ovidiu Radulescu, Andreas Weber, Holger Fröhlich:
Linking metabolic network features to phenotypes using sparse group lasso. Bioinform. 33(21): 3445-3453 (2017) - [j16]Eun-Jin Kim, Lucille-Marie Tenkès, Rainer Hollerbach, Ovidiu Radulescu:
Far-From-Equilibrium Time Evolution between Two Gamma Distributions. Entropy 19(10): 511 (2017) - [j15]Aurélien Naldi, Romain M. Larive, Urszula Czerwinska, Serge Urbach, Philippe Montcourrier, Christian Roy, Jérôme Solassol, Gilles Freiss, Peter J. Coopman, Ovidiu Radulescu:
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. PLoS Comput. Biol. 13(3) (2017) - [j14]Sergei Vakulenko, Ovidiu Radulescu, Ivan Morozov, Andreas Weber:
Centralized Networks to Generate Human Body Motions. Sensors 17(12): 2907 (2017) - [c11]Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CASC 2017: 93-108 - [c10]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
A Case Study on the Parametric Occurrence of Multiple Steady States. ISSAC 2017: 45-52 - [i2]Russell J. Bradford, James H. Davenport, Matthew England, Hassan Errami, Vladimir P. Gerdt, Dima Grigoriev, Charles Tapley Hoyt, Marek Kosta, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
A Case Study on the Parametric Occurrence of Multiple Steady States. CoRR abs/1704.08997 (2017) - [i1]Matthew England, Hassan Errami, Dima Grigoriev, Ovidiu Radulescu, Thomas Sturm, Andreas Weber:
Symbolic Versus Numerical Computation and Visualization of Parameter Regions for Multistationarity of Biological Networks. CoRR abs/1706.08794 (2017) - 2016
- [j13]Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber, Nathalie Théret, Ovidiu Radulescu:
Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors. Biosyst. 149: 3-14 (2016) - [c9]Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu:
Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. CMSB 2016: 273-288 - 2015
- [c8]Satya Swarup Samal, Dima Grigoriev, Holger Fröhlich, Ovidiu Radulescu:
Analysis of Reaction Network Systems Using Tropical Geometry. CASC 2015: 424-439 - [c7]Ovidiu Radulescu, Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber:
Symbolic Dynamics of Biochemical Pathways as Finite States Machines. CMSB 2015: 104-120 - 2014
- [j12]Sylvain Soliman, François Fages, Ovidiu Radulescu:
A constraint solving approach to model reduction by tropical equilibration. Algorithms Mol. Biol. 9: 24 (2014) - 2013
- [j11]Partho Sen, Henri J. Vial, Ovidiu Radulescu:
Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways. BMC Syst. Biol. 7: 123 (2013) - [c6]Vincent Noël, Sergey Vakulenko, Ovidiu Radulescu:
A hybrid mammalian cell cycle model. HSB 2013: 68-83 - 2012
- [j10]Sergei Vakulenko, Ovidiu Radulescu:
Flexible and Robust Patterning by Centralized Gene Networks. Fundam. Informaticae 118(4): 345-369 (2012) - [j9]Sergei Vakulenko, Ovidiu Radulescu:
Flexible and Robust Networks. J. Bioinform. Comput. Biol. 10(2) (2012) - [c5]Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu:
Hybrid models of the cell cycle molecular machinery. HSB 2012: 88-105 - 2011
- [j8]Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel:
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1223-1234 (2011) - [j7]Ovidiu Radulescu, Anne Siegel, Elisabeth Pécou, Clément Chatelain, Sandrine Lagarrigue:
Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities. Trans. Comp. Sys. Biology 13: 110-130 (2011) - [c4]Vincent Noel, Sergei Vakulenko, Ovidiu Radulescu:
Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation. WABI 2011: 225-236 - [c3]Vincent Noel, Dima Grigoriev, Sergei Vakulenko, Ovidiu Radulescu:
Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models. SASB 2011: 75-91 - 2010
- [j6]Tatiana Baumuratova, Didier Surdez, Bernard Delyon, Gautier Stoll, Olivier Delattre, Ovidiu Radulescu, Anne Siegel:
Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network. BMC Syst. Biol. 4: 146 (2010)
2000 – 2009
- 2009
- [j5]Alina Crudu, Arnaud Debussche, Ovidiu Radulescu:
Hybrid stochastic simplifications for multiscale gene networks. BMC Syst. Biol. 3: 89 (2009) - [j4]Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz:
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5(3) (2009) - [c2]Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu:
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks. AIAI Workshops 2009: 72-87 - 2008
- [j3]Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel:
Inferring the role of transcription factors in regulatory networks. BMC Bioinform. 9 (2008) - [j2]Ovidiu Radulescu, Alexander N. Gorban, Andrei Yu. Zinovyev, Alain Lilienbaum:
Robust simplifications of multiscale biochemical networks. BMC Syst. Biol. 2: 86 (2008) - [c1]Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel:
Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets. CIBB 2008: 144-155 - 2007
- [j1]Ovidiu Radulescu, Aurélie Muller, Alina Crudu:
Théorèmes limites pour les processus de Markov à sauts. Tech. Sci. Informatiques 26(3-4): 443-469 (2007)
Coauthor Index
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last updated on 2024-10-07 22:17 CEST by the dblp team
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