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Massimo La Rosa
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Journal Articles
- 2023
- [j19]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Salvatore Gaglio, Alfonso Urso:
GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data. Briefings Bioinform. 24(6) (2023) - [j18]Valentina Brancato, Nadia Brancati, Giusy Esposito, Massimo La Rosa, Carlo Cavaliere, Ciro Allarà, Valeria Romeo, Giuseppe De Pietro, Marco Salvatore, Marco Aiello, Mara Sangiovanni:
A Two-Step Feature Selection Radiomic Approach to Predict Molecular Outcomes in Breast Cancer. Sensors 23(3): 1552 (2023) - 2020
- [j17]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. BMC Bioinform. 21-S(8): 199 (2020) - [j16]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Giosuè Lo Bosco, Riccardo Rizzo:
BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics. BMC Bioinform. 21-S(8): 363 (2020) - 2019
- [j15]Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso:
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. 20-S(4): 125:1-125:9 (2019) - [j14]Valeria Boscaino, Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
MiRNA therapeutics based on logic circuits of biological pathways. BMC Bioinform. 20-S(9): 344:1-344:22 (2019) - 2018
- [j13]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Giosuè Lo Bosco, Giovanni Renda, Riccardo Rizzo, Salvatore Gaglio, Alfonso Urso:
Deep learning models for bacteria taxonomic classification of metagenomic data. BMC Bioinform. 19-S(7): 61-76 (2018) - [j12]Antonio Messina, Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Alfonso Urso:
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. BMC Syst. Biol. 12(5): 75-89 (2018) - 2017
- [j11]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
nRC: non-coding RNA Classifier based on structural features. BioData Min. 10(1): 27:1-27:18 (2017) - 2016
- [j10]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
MiRNATIP: a SOM-based miRNA-target interactions predictor. BMC Bioinform. 17(S-11): 321 (2016) - 2015
- [j9]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network. Artif. Intell. Medicine 64(3): 173-184 (2015) - [j8]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Riccardo Rizzo, Alfonso Urso:
Analysis of miRNA expression profiles in breast cancer using biclustering. BMC Bioinform. 16(S-4): S7 (2015) - [j7]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Probabilistic topic modeling for the analysis and classification of genomic sequences. BMC Bioinform. 16(S-6): S2 (2015) - 2014
- [j6]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
An expert system hybrid architecture to support experiment management. Expert Syst. Appl. 41(4): 1609-1621 (2014) - [j5]Antonino Fiannaca, Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
The BioDICE Taverna plugin for clustering and visualization of biological data: a workflow for molecular compounds exploration. J. Cheminformatics 6(1): 24 (2014) - 2013
- [j4]Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Riccardo Rizzo, Salvatore Gaglio:
A knowledge-based decision support system in bioinformatics: an application to protein complex extraction. BMC Bioinform. 14(S-1): S5 (2013) - [j3]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Alignment-free analysis of barcode sequences by means of compression-based methods. BMC Bioinform. 14(S-7): S4 (2013) - 2011
- [j2]Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
Soft Topographic Maps for Clustering and Classifying Bacteria Using Housekeeping Genes. Adv. Artif. Neural Syst. 2011: 617427:1-617427:8 (2011) - 2009
- [j1]Massimo La Rosa, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Normalised compression distance and evolutionary distance of genomic sequences: comparison of clustering results. Int. J. Knowl. Eng. Soft Data Paradigms 1(4): 345-362 (2009)
Conference and Workshop Papers
- 2024
- [c21]Andrea Licciardi, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Laura La Paglia:
A Deep Learning Multi-omics Framework to Combine Microbiome and Metabolome Profiles for Disease Classification. ICANN (8) 2024: 3-14 - 2022
- [c20]Gianmarco Coppola, Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Alfonso Urso, Salvatore Gaglio:
A Gene Ontology-Driven Wide and Deep Learning Architecture for Cell-Type Classification from Single-Cell RNA-seq Data. EANN 2022: 323-335 - 2018
- [c19]Giosuè Lo Bosco, Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
Variable Ranking Feature Selection for the Identification of Nucleosome Related Sequences. ADBIS (Short Papers and Workshops) 2018: 314-324 - [c18]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Giosuè Lo Bosco, Riccardo Rizzo, Alfonso Urso:
Identification of Key miRNAs in Regulation of PPI Networks. CIBB 2018: 107-117 - 2017
- [c17]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Antonio Messina, Riccardo Rizzo, Dario Stabile, Alfonso Urso:
Gremlin Language for Querying the BiographDB Integrated Biological Database. IWBBIO (1) 2017: 303-313 - 2016
- [c16]Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Antonio Messina, Riccardo Rizzo, Alfonso Urso:
A Problem-Driven Approach for Building a Bioinformatics GraphDB. CIBB 2016: 134-144 - [c15]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
Classification Experiments of DNA Sequences by Using a Deep Neural Network and Chaos Game Representation. CompSysTech 2016: 222-228 - [c14]Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Antonio Messina, Pietro Storniolo, Alfonso Urso:
Integrated DB for Bioinformatics: A Case Study on Analysis of Functional Effect of MiRNA SNPs in Cancer. ITBAM 2016: 214-222 - [c13]Giosuè Lo Bosco, Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
A Deep Learning Model for Epigenomic Studies. SITIS 2016: 688-692 - 2015
- [c12]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
A Deep Learning Approach to DNA Sequence Classification. CIBB 2015: 129-140 - 2014
- [c11]Riccardo Rizzo, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso:
The General Regression Neural Network to Classify Barcode and mini-barcode DNA. CIBB 2014: 142-155 - [c10]Antonino Fiannaca, Massimo La Rosa, Salvatore Gaglio, Riccardo Rizzo, Alfonso Urso:
Knowledge organization for modelling workflows in Taverna environment. MED 2014: 972-977 - 2013
- [c9]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
Genomic Sequence Classification Using Probabilistic Topic Modeling. CIBB 2013: 49-61 - [c8]Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
Analysis of DNA Barcode Sequences Using Neural Gas and Spectral Representation. EANN (2) 2013: 212-221 - 2012
- [c7]Massimo La Rosa, Antonino Fiannaca, Riccardo Rizzo, Alfonso Urso:
A Study of Compression-Based Methods for the Analysis of Barcode Sequences. CIBB 2012: 105-116 - [c6]Antonino Fiannaca, Massimo La Rosa, Salvatore Gaglio:
An ontology design methodology for Knowledge-Based systems with application to bioinformatics. CIBCB 2012: 85-91 - [c5]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso:
An Intelligent System for Building Bioinformatics Workflows. CISIS 2012: 212-218 - 2010
- [c4]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Daniele Peri, Riccardo Rizzo, Alfonso Urso:
A Knowledge Based Decision Support System for Bioinformatics and System Biology. CIBB 2010: 215-228 - 2009
- [c3]Antonino Fiannaca, Salvatore Gaglio, Massimo La Rosa, Daniele Peri, Riccardo Rizzo, Alfonso Urso:
A Proposed Knowledge Based Approach for Solving Proteomics Issues. CIBB 2009: 304-318 - 2008
- [c2]Massimo La Rosa, Riccardo Rizzo, Alfonso Urso, Salvatore Gaglio:
Comparison of Genomic Sequences Clustering Using Normalized Compression Distance and Evolutionary Distance. KES (3) 2008: 740-746 - 2007
- [c1]Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Giovanni M. Giammanco, Riccardo Rizzo, Alfonso Urso:
Soft Topographic Map for Clustering and Classification of Bacteria. IDA 2007: 332-343
Reference Works
- 2019
- [r2]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Valentina Ravì, Riccardo Rizzo:
Data Mining: Classification and Prediction. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 384-402 - [r1]Alfonso Urso, Antonino Fiannaca, Massimo La Rosa, Valentina Ravì, Riccardo Rizzo:
Data Mining: Prediction Methods. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 413-430
Informal and Other Publications
- 2011
- [i1]Antonino Fiannaca, Massimo La Rosa, Daniele Peri, Riccardo Rizzo:
An Intelligent System for Decision Support in Bioinformatics. ERCIM News 2011(84): 35 (2011)
Coauthor Index
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