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ORCIDLiam J. McGuffin
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2020 – today
- 2023
[j28]Alessio Del Conte
, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023)- [j27]Liam J. McGuffin, Nicholas S. Edmunds, Ahmet G. Genc, Shuaa M. A Alharbi, Bajuna R. Salehe, Recep Adiyaman:
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. Nucleic Acids Res. 51(W1): 274-280 (2023) - 2021
- [j26]Liam J. McGuffin, Fahd M. F. Aldowsari, Shuaa M. A Alharbi, Recep Adiyaman:
ModFOLD8: accurate global and local quality estimates for 3D protein models. Nucleic Acids Res. 49(Webserver-Issue): 425-430 (2021) - [j25]Recep Adiyaman, Liam J. McGuffin:
ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts. Nucleic Acids Res. 49(Webserver-Issue): 589-596 (2021)
2010 – 2019
- 2019
- [j24]Liam J. McGuffin, Recep Adiyaman, Ali H. A. Maghrabi, Ahmad N. Shuid, Danielle A. Brackenridge, John O. Nealon, Limcy S. Philomina:
IntFOLD: an integrated web resource for high performance protein structure and function prediction. Nucleic Acids Res. 47(Webserver-Issue): W408-W413 (2019) - 2017
- [j23]Ali H. A. Maghrabi, Liam J. McGuffin:
ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models. Nucleic Acids Res. 45(Webserver-Issue): W416-W421 (2017) - [j22]Ahmad N. Shuid, Robert Kempster, Liam J. McGuffin:
ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates. Nucleic Acids Res. 45(Webserver-Issue): W422-W428 (2017) - 2015
- [j21]Liam J. McGuffin, Jennifer D. Atkins, Bajuna R. Salehe, Ahmad N. Shuid, Daniel B. Roche:
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. Nucleic Acids Res. 43(Webserver-Issue): W169-W173 (2015) - 2013
- [j20]Daniel B. Roche, Maria T. Buenavista, Liam J. McGuffin:
The FunFOLD2 server for the prediction of protein-ligand interactions. Nucleic Acids Res. 41(Webserver-Issue): 303-307 (2013) - [j19]Liam J. McGuffin, Maria T. Buenavista, Daniel B. Roche:
The ModFOLD4 server for the quality assessment of 3D protein models. Nucleic Acids Res. 41(Webserver-Issue): 368-372 (2013) - 2012
- [j18]Maria T. Buenavista, Daniel B. Roche, Liam J. McGuffin:
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment. Bioinform. 28(14): 1851-1857 (2012) - 2011
- [j17]Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin:
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. BMC Bioinform. 12: 160 (2011) - [j16]Daniel B. Roche, Maria T. Buenavista, Stuart J. Tetchner, Liam J. McGuffin:
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction. Nucleic Acids Res. 39(Web-Server-Issue): 171-176 (2011) - 2010
- [j15]Liam J. McGuffin, Daniel B. Roche:
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments. Bioinform. 26(2): 182-188 (2010) - [j14]Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin:
The binding site distance test score: a robust method for the assessment of predicted protein binding sites. Bioinform. 26(22): 2920-2921 (2010)
2000 – 2009
- 2008
- [j13]Liam J. McGuffin:
The ModFOLD server for the quality assessment of protein structural models. Bioinform. 24(4): 586-587 (2008) - [j12]Liam J. McGuffin:
Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinform. 24(16): 1798-1804 (2008) - 2007
- [j11]Liam J. McGuffin:
Benchmarking consensus model quality assessment for protein fold recognition. BMC Bioinform. 8 (2007) - 2006
- [j10]Liam J. McGuffin, Richard T. Smith, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones:
High throughput profile-profile based fold recognition for the entire human proteome. BMC Bioinform. 7: 288 (2006) - 2005
- [j9]Chris Steven Pettitt, Liam J. McGuffin, David T. Jones:
Improving sequence-based fold recognition by using 3D model quality assessment. Bioinform. 21(17): 3509-3515 (2005) - [j8]Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones:
Protein structure prediction servers at University College London. Nucleic Acids Res. 33(Web-Server-Issue): 36-38 (2005) - 2004
- [j7]Liam J. McGuffin, Stefano A. Street, Søren-Aksel Sørensen, David T. Jones:
The Genomic Threading Database. Bioinform. 20(1): 131-132 (2004) - [j6]Jonathan J. Ward, Liam J. McGuffin, Kevin Bryson, Bernard F. Buxton, David T. Jones:
The DISOPRED server for the prediction of protein disorder. Bioinform. 20(13): 2138-2139 (2004) - [j5]Liam J. McGuffin, Stefano A. Street, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones:
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms. Nucleic Acids Res. 32(Database-Issue): 196-199 (2004) - [c1]Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones:
Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures. CSB 2004: 702-703 - 2003
- [j4]Liam J. McGuffin, David T. Jones:
Improvement of the GenTHREADER Method for Genomic Fold Recognition. Bioinform. 19(7): 874-881 (2003) - [j3]Jonathan J. Ward, Liam J. McGuffin, Bernard F. Buxton, David T. Jones:
Secondary structure prediction with support vector machines. Bioinform. 19(13): 1650-1655 (2003) - 2001
- [j2]Liam J. McGuffin, Kevin Bryson, David T. Jones:
What are the baselines for protein fold recognition? Bioinform. 17(1): 63-72 (2001) - 2000
- [j1]Liam J. McGuffin, Kevin Bryson, David T. Jones:
The PSIPRED protein structure prediction server. Bioinform. 16(4): 404-405 (2000)
Coauthor Index
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