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2020 – today
- 2024
[j2]Kevin Karnani
, Joel Pepper, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen, Jane Greenberg:
Computational metadata generation methods for biological specimen image collections. Int. J. Digit. Libr. 25(2): 157-174 (2024)- [c7]Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne:
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution. ECCV (89) 2024: 137-153 - [i5]Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne:
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. CoRR abs/2407.08027 (2024) - [i4]Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne:
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution. CoRR abs/2408.00160 (2024) - [i3]M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Wasila M. Dahdul, Anuj Karpatne:
VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images. CoRR abs/2408.16176 (2024) - 2023
- [c6]Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne:
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. KDD 2023: 3966-3978 - [i2]Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne:
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. CoRR abs/2306.03228 (2023) - 2022
- [c5]Dom Jebbia, Xiaojun Wang, Yasin Bakis, Henry L. Bart Jr., Jane Greenberg:
Toward a Flexible Metadata Pipeline for Fish Specimen Images. MTSR 2022: 175-190 - [i1]Dom Jebbia, Xiaojun Wang, Yasin Bakis, Henry L. Bart Jr., Jane Greenberg:
Toward a Flexible Metadata Pipeline for Fish Specimen Images. CoRR abs/2211.15472 (2022) - 2021
- [c4]Joel Pepper, Jane Greenberg, Yasin Bakis, Xiaojun Wang, Henry L. Bart Jr., David E. Breen:
Automatic Metadata Generation for Fish Specimen Image Collections. JCDL 2021: 31-40 - 2020
- [c3]Jeremy Leipzig, Yasin Bakis, Xiaojun Wang, Mohannad Elhamod, Kelly Diamond, Wasila M. Dahdul, Anuj Karpatne, A. Murat Maga, Paula M. Mabee, Henry L. Bart Jr., Jane Greenberg:
Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species. MTSR 2020: 3-12
2010 – 2019
- 2013
- [j1]Yasin Bakis, Hasan H. Otu, Nivart Taçi, Cem Meydan, Nee Bilgin, Sirri Yüzbaiolu, Osman Ugur Sezerman:
Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure. BMC Bioinform. 14: 20 (2013)
2000 – 2009
- 2009
- [c2]Yasin Bakis, Osman Ugur Sezerman, M. Tekin Babaç, Cem Meydan:
Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method. GECCO (Companion) 2009: 1967-1970 - [c1]Deniz Yörükoglu, Yasin Bakis, Osman Ugur Sezerman:
An entropy based heuristic model for predicting functional sub-type divisions of protein families. GECCO (Companion) 2009: 2173-2178
Coauthor Index
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