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Rasmus Nielsen
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2020 – today
- 2022
- [j19]Lenore Pipes, Rasmus Nielsen:
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees. Bioinform. 38(3): 663-670 (2022) - [j18]Sandra Hui, Rasmus Nielsen:
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing. Bioinform. 38(7): 1801-1808 (2022) - [j17]Sandra Hui, Rasmus Nielsen:
SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances. BMC Bioinform. 23(1): 348 (2022) - 2020
- [j16]José Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas:
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinform. 36(3): 828-841 (2020) - [j15]Jingwen Pei, Yiming Zhang, Rasmus Nielsen, Yufeng Wu:
Inferring the ancestry of parents and grandparents from genetic data. PLoS Comput. Biol. 16(8) (2020)
2010 – 2019
- 2017
- [j14]Jade Yu Cheng, Thomas Mailund, Rasmus Nielsen:
Fast admixture analysis and population tree estimation for SNP and NGS data. Bioinform. 33(14): 2148-2155 (2017) - 2016
- [j13]Michael Degiorgio, Christian D. Huber, Melissa J. Hubisz, Ines Hellmann, Rasmus Nielsen:
SweepFinder2: increased sensitivity, robustness and flexibility. Bioinform. 32(12): 1895-1897 (2016) - [j12]Filipe G. Vieira, Anders Albrechtsen, Rasmus Nielsen:
Estimating IBD tracts from low coverage NGS data. Bioinform. 32(14): 2096-2102 (2016) - [j11]Anna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller, Vitor C. Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Yu Cheng, Jacob E. Crawford, Tim H. Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L. Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn Sand Korneliussen, Ivan P. Levkivskyi, José Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A. Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F. Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A. Matisoo-Smith, Peter J. McAllister, Alexander J. Mentzer, Mait Metspalu, Andrea B. Migliano, Les Murgha, Maude E. Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G. Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J. Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H. Schierup, Robert A. Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D. Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S. Sandhu, Laurent Excoffier, David M. Lambert, Eske Willerslev:
A genomic history of Aboriginal Australia. Nat. 538(7624): 207-214 (2016) - [c4]Elias Z. Tragos, Rasmus Nielsen, Adam Kapovits, Claudio Cicconetti, Enzo Mingozzi, Jaudelice Cavalcante de Oliveira, Xiaohua Jia, Stefano Iellamo, Vangelis Angelakis:
Workshop message: IoT-SoS 2016. WoWMoM 2016: 1 - 2015
- [c3]Dan Gusfield, Rasmus Nielsen:
Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming. WABI 2015: 136-147 - 2014
- [j10]Matteo Fumagalli, Filipe G. Vieira, Tyler Linderoth, Rasmus Nielsen:
ngsTools: methods for population genetics analyses from next-generation sequencing data. Bioinform. 30(10): 1486-1487 (2014) - [j9]Anna-Sapfo Malaspinas, Ole Tange, José Víctor Moreno-Mayar, Morten Rasmussen, Michael Degiorgio, Yong Wang, Cristina E. Valdiosera, Gustavo Politis, Eske Willerslev, Rasmus Nielsen:
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinform. 30(20): 2962-2964 (2014) - [j8]Thorfinn Korneliussen, Anders Albrechtsen, Rasmus Nielsen:
ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinform. 15: 356 (2014) - 2013
- [j7]Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen:
Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinform. 14: 289 (2013) - 2011
- [j6]Su Yeon Kim, Kirk E. Lohmueller, Anders Albrechtsen, Yingrui Li, Thorfinn Korneliussen, Geng Tian, Niels Grarup, Tao Jiang, Gitte Andersen, Daniel Witte, Torben Jørgensen, Torben Hansen, Oluf Pedersen, Jun Wang, Rasmus Nielsen:
Estimation of allele frequency and association mapping using next-generation sequencing data. BMC Bioinform. 12: 231 (2011)
2000 – 2009
- 2007
- [j5]Wendy S. W. Wong, Rasmus Nielsen:
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models. Bioinform. 23(16): 2031-2037 (2007) - [j4]Thomas L. York, Richard Durrett, Rasmus Nielsen:
Dependence of paracentric inversion rate on tract length. BMC Bioinform. 8 (2007) - 2006
- [j3]Wendy S. W. Wong, Raazesh Sainudiin, Rasmus Nielsen:
Identification of physicochemical selective pressure on protein encoding nucleotide sequences. BMC Bioinform. 7: 148 (2006) - 2005
- [c2]Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen:
Detecting coevolving amino acid sites using Bayesian mutational mapping. ISMB (Supplement of Bioinformatics) 2005: 126-135 - 2002
- [j2]J. Signorovitch, Rasmus Nielsen:
PATRI-paternity inference using genetic data. Bioinform. 18(2): 341-342 (2002) - [j1]Thomas L. York, Richard Durrett, Rasmus Nielsen:
Bayesian Estimation of the Number of Inversions in the History of Two Chromosomes. J. Comput. Biol. 9(6): 805-818 (2002) - [c1]Rasmus Nielsen, John P. Huelsenbeck:
Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values. Pacific Symposium on Biocomputing 2002: 576-588
Coauthor Index
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