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2020 – today
- 2022
[c11]Honglin Wang
, Pujan Joshi, Chenyu Zhang, Peter F. Maye, David W. Rowe, Dong-Guk Shin:
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. BCB 2022: 27:1-27:4- [c10]Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin:
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. BIBM 2022: 1387-1392 - 2021
- [c9]Pujan Joshi, Honglin Wang, Salvatore Jaramillo, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts. BIBM 2021: 245-248 - [c8]Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Dong-Ju Shin, Dong-Guk Shin:
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. BIBM 2021: 270-273 - 2020
- [c7]Pujan Joshi, Brent Basso, Honglin Wang, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
Identification of Key Biological Pathway Routes in Cancer Cohorts. BIBM 2020: 154-157 - [c6]Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Peter F. Maye, David W. Rowe, Dong-Guk Shin:
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. BIBM 2020: 164-167 - [c5]Pujan Joshi, Honglin Wang, Brent Basso, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
A Framework for Route Based Pathway Analysis of Gene Expression Data. ICCBB 2020: 20-26
2010 – 2019
- 2019
- [c4]Yue Zhao, Pujan Joshi, Dong-Guk Shin:
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data. BIBM 2019: 610-615 - 2016
- [c3]Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin:
Deep pathway analysis incorporating mutation information and gene expression data. BIBM 2016: 260-265 - 2013
- [c2]Pujan Joshi, Baikang Pei, Seung-Hyun Hong, Ivo Kalajzic, Dong-Ju Shin, David W. Rowe, Dong-Guk Shin:
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. BIBM 2013: 210-213
2000 – 2009
- 2009
- [c1]Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe:
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. IJCBS 2009: 30-36
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