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ORCIDTiziana Castrignanò
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2020 – today
- 2024
[j18]Lorenzo Arcioni, Manuel Arcieri
, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò:
HPC-T-Annotator: an HPC tool for de novo transcriptome assembly annotation. BMC Bioinform. 25(1): 272 (2024)- 2023
- [c4]Valentina Pinna, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò:
IGUANER - DIfferential Gene Expression and fUnctionAl aNalyzER. BDA (Astronomy, Science, and Engineering) 2023: 78-93 - 2022
- [c3]Alessandro Petrini, Marco Notaro, Jessica Gliozzo, Tiziana Castrignanò, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini:
ParSMURF-NG: A Machine Learning High Performance Computing System for the Analysis of Imbalanced Big Omics Data. AIAI Workshops 2022: 424-435 - 2021
- [j17]Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi:
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments. Nucleic Acids Res. 49(Database-Issue): D1012-D1019 (2021) - 2020
- [j16]Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli:
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. 21-S(10): 352 (2020) - [j15]Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò:
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis. BMC Bioinform. 21-S(10): 353 (2020)
2010 – 2019
- 2018
- [c2]Paolo Bottoni, Tiziana Castrignanò, Tiziano Flati, Francesco Maggi:
BioWebEngine: A generation environment for bioinformatics research. VL/HCC 2018: 329-330 - 2014
- [c1]Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole:
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data. HPCS 2014: 608-615 - 2013
- [j14]Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò:
WEP: a high-performance analysis pipeline for whole-exome data. BMC Bioinform. 14(S-7): S11 (2013) - [j13]Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole:
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Res. 41(Database-Issue): 125-131 (2013) - 2012
- [j12]Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi:
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa. Nucleic Acids Res. 40(Database-Issue): 1168-1172 (2012) - 2011
- [j11]Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole:
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments. Bioinform. 27(9): 1311-1312 (2011) - [j10]Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole:
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - 2010
- [j9]David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole:
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Briefings Bioinform. 11(2): 181-197 (2010)
2000 – 2009
- 2009
- [j8]Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò:
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j7]Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole:
ASPicDB: A database resource for alternative splicing analysis. Bioinform. 24(10): 1300-1304 (2008) - 2007
- [j6]Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano:
The MEPS server for identifying protein conformational epitopes. BMC Bioinform. 8(S-1) (2007) - [j5]Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole:
A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Gener. Comput. Syst. 23(3): 371-381 (2007) - 2006
- [j4]Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole:
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinform. 22(4): 497-499 (2006) - [j3]Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano:
The PMDB Protein Model Database. Nucleic Acids Res. 34(Database-Issue): 306-309 (2006) - [j2]Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole:
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Res. 34(Web-Server-Issue): 440-443 (2006) - 2004
- [j1]Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole:
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res. 32(Web-Server-Issue): 624-627 (2004)
Coauthor Index
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