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2020 – today
- 2022
[j46]Yi-Kung Shieh, Dao-Yuan Peng, Yu-Han Chen, Tsung-Wei Wu, Chin Lung Lu
:
An Integer Linear Programming Approach for Scaffolding Based on Exemplar Breakpoint Distance. J. Comput. Biol. 29(9): 961-973 (2022)- [j45]Shu-Cheng Liu, Yan-Ru Ju, Chin Lung Lu:
Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes. Nucleic Acids Res. 50(W1): 500-509 (2022) - 2021
- [j44]Toan Thang Ta, Yi-Kung Shieh, Chin Lung Lu:
Computing a longest common almost-increasing subsequence of two sequences. Theor. Comput. Sci. 854: 44-51 (2021) - [j43]Yi-Kung Shieh, Shyong Jian Shyu, Chin Lung Lu, Richard Chia-Tung Lee:
The exact multiple pattern matching problem solved by a reference tree approach. Theor. Comput. Sci. 882: 29-48 (2021) - 2020
- [j42]Ming-Feng Hsieh, Chin Lung Lu, Chuan Yi Tang:
Clover: a clustering-oriented de novo assembler for Illumina sequences. BMC Bioinform. 21(1): 528 (2020)
2010 – 2019
- 2018
- [j41]Kun-Tze Chen, Chia-Liang Liu, Shang-Hao Huang, Hsin-Ting Shen, Yi-Kung Shieh, Hsien-Tai Chiu, Chin Lung Lu:
CSAR: a contig scaffolding tool using algebraic rearrangements. Bioinform. 34(1): 109-111 (2018) - [j40]Toan Thang Ta, Cheng-Yao Lin, Chin Lung Lu:
Two-string consensus problem under non-overlapping inversion and transposition distance. Inf. Process. Lett. 130: 46-51 (2018) - [j39]Kun-Tze Chen, Chin Lung Lu:
CSAR-web: a web server of contig scaffolding using algebraic rearrangements. Nucleic Acids Res. 46(Webserver-Issue): W55-W59 (2018) - 2017
- [j38]Ching-Yu Yen, Jian-Cheng Lin, Kun-Tze Chen, Chin Lung Lu:
R3D-BLAST2: an improved search tool for similar RNA 3D substructures. BMC Bioinform. 18(16): 31-38 (2017) - 2016
- [j37]Kun-Tze Chen, Cheih-Jung Chen, Hsin-Ting Shen, Chia-Liang Liu, Shang-Hao Huang, Chin Lung Lu:
Multi-CAR: a tool of contig scaffolding using multiple references. BMC Bioinform. 17(S-17): 185-192 (2016) - [j36]Toan Thang Ta, Cheng-Yao Lin, Chin Lung Lu:
An efficient algorithm for computing non-overlapping inversion and transposition distance. Inf. Process. Lett. 116(12): 744-749 (2016) - [j35]Chung-Han Yang, Cheng-Ting Shih, Kun-Tze Chen, Po-Han Lee, Ping-Han Tsai, Jian-Cheng Lin, Ching-Yu Yen, Tiao-Yin Lin, Chin Lung Lu:
iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2. Nucleic Acids Res. 44(Webserver-Issue): W328-W332 (2016) - [j34]Kun-Tze Chen, Chi-Long Li, Hsien-Tai Chiu, Chin Lung Lu:
An efficient algorithm for one-sided block ordering problem under block-interchange distance. Theor. Comput. Sci. 609: 296-305 (2016) - [r2]Chin Lung Lu:
Sorting by Transpositions and Reversals (Approximate Ratio 1.5). Encyclopedia of Algorithms 2016: 2022-2026 - 2015
- [j33]Chia Shin Ou, Chin Lung Lu, Richard C. T. Lee:
A Systematical and Parallel Approach to Solve Problems Involving Special Properties of Bit-Vectors. Comput. J. 58(5): 1112-1121 (2015) - [j32]Chin Lung Lu:
An Efficient Algorithm for the Contig Ordering Problem under Algebraic Rearrangement Distance. J. Comput. Biol. 22(11): 975-987 (2015) - 2014
- [j31]Chin Lung Lu, Kun-Tze Chen, Shih-Yuan Huang, Hsien-Tai Chiu:
CAR: contig assembly of prokaryotic draft genomes using rearrangements. BMC Bioinform. 15: 381 (2014) - [c11]Shih-Yuan Huang, Chung-Han Yang, Toan Thang Ta, Chin Lung Lu:
Approximate String Matching Problem under Non-Overlapping Inversion Distance. ICS 2014: 40-48 - [c10]Shih-Wen Chou, Chung-Han Yang, Kun-Tze Chen, Chin Lung Lu:
Prefix Block-Interchanges on Binary Strings. ICS 2014: 1960-1969 - 2013
- [j30]Chi-Long Li, Kun-Tze Chen, Chin Lung Lu:
Assembling contigs in draft genomes using reversals and block-interchanges. BMC Bioinform. 14(S-5): S9 (2013) - [j29]Chia Wei Lu, Chin Lung Lu, Richard C. T. Lee:
A new filtration method and a hybrid strategy for approximate string matching. Theor. Comput. Sci. 481: 9-17 (2013) - [c9]Kun-Tze Chen, Chi-Long Li, Chung-Han Yang, Chin Lung Lu:
An Efficient Algorithm for One-Sided Block Ordering Problem with Block-Interchange Distance. COCOON 2013: 409-420 - 2011
- [j28]Yun-Chen Liu, Chung-Han Yang, Kun-Tze Chen, Jyun-Rong Wang, Mei-Ling Cheng, Jen-Chun Chung, Hsien-Tai Chiu, Chin Lung Lu:
R3D-BLAST: a search tool for similar RNA 3D substructures. Nucleic Acids Res. 39(Web-Server-Issue): 45-49 (2011) - 2010
- [j27]Chih-Hsien Cheng, Chung-Han Yang, Hsien-Tai Chiu, Chin Lung Lu:
Reconstructing genome trees of prokaryotes using overlapping genes. BMC Bioinform. 11: 102 (2010) - [j26]Yen-Lin Huang, Cheng-Chen Huang, Chuan Yi Tang, Chin Lung Lu:
An improved algorithm for sorting by block-interchanges based on permutation groups. Inf. Process. Lett. 110(8-9): 345-350 (2010) - [j25]Yen-Lin Huang, Chin Lung Lu:
Sorting by Reversals, Generalized Transpositions, and Translocations Using Permutation Groups. J. Comput. Biol. 17(5): 685-705 (2010) - [j24]Yen-Lin Huang, Chen-Cheng Huang, Chuan Yi Tang, Chin Lung Lu:
SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations. Nucleic Acids Res. 38(Web-Server-Issue): 221-227 (2010) - [j23]Chih-Wei Wang, Kun-Tze Chen, Chin Lung Lu:
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures. Nucleic Acids Res. 38(Web-Server-Issue): 340-347 (2010)
2000 – 2009
- 2009
- [j22]Chin-En Lai, Ming-Yuan Tsai, Yun-Chen Liu, Chih-Wei Wang, Kun-Tze Chen, Chin Lung Lu:
FASTR3D: a fast and accurate search tool for similar RNA 3D structures. Nucleic Acids Res. 37(Web-Server-Issue): 287-295 (2009) - 2008
- [j21]Hsin-Hao Su, Chin Lung Lu, Chuan Yi Tang:
An improved algorithm for finding a length-constrained maximum-density subtree in a tree. Inf. Process. Lett. 109(2): 161-164 (2008) - [j20]Yen-Fu Chang, Yen-Lin Huang, Chin Lung Lu:
SARSA: a web tool for structural alignment of RNA using a structural alphabet. Nucleic Acids Res. 36(Web-Server-Issue): 19-24 (2008) - [j19]Li-Wei Jiang, Kuang-Lun Lin, Chin Lung Lu:
OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes. Nucleic Acids Res. 36(Web-Server-Issue): 475-480 (2008) - [r1]Chin Lung Lu:
Sorting by Transpositions and Reversals (Approximate Ratio 1.5). Encyclopedia of Algorithms 2008 - 2007
- [j18]Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang:
Constrained sequence alignment: A general model and the hardness results. Discret. Appl. Math. 155(18): 2471-2486 (2007) - [j17]Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang:
Efficient algorithms for regular expression constrained sequence alignment. Inf. Process. Lett. 103(6): 240-246 (2007) - [j16]Yun Sheng Chung, Wei-Hsun Lee, Chuan Yi Tang, Chin Lung Lu:
RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints. Nucleic Acids Res. 35(Web-Server-Issue): 639-644 (2007) - 2006
- [j15]Chin Lung Lu, Yen-Lin Huang, Tsui Ching Wang, Hsien-Tai Chiu:
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges. BMC Bioinform. 7: 295 (2006) - [j14]Ying Chih Lin, Chin Lung Lu, Ying-Chuan Liu, Chuan Yi Tang:
SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges. Nucleic Acids Res. 34(Web-Server-Issue): 696-699 (2006) - [c8]Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang:
Efficient Algorithms for Regular Expression Constrained Sequence Alignment. CPM 2006: 389-400 - 2005
- [j13]Chin Lung Lu, Yen Pin Huang:
A memory-efficient algorithm for multiple sequence alignment with constraints. Bioinform. 21(1): 20-30 (2005) - [j12]Chin Lung Lu, Tsui Ching Wang, Ying Chih Lin, Chuan Yi Tang:
ROBIN: a tool for genome rearrangement of block-interchanges. Bioinform. 21(11): 2780-2782 (2005) - [j11]Chun-Hsiang Huang, Chin Lung Lu, Hsien-Tai Chiu:
A heuristic approach for detecting RNA H-type pseudoknots. Bioinform. 21(17): 3501-3508 (2005) - [j10]Ying Chih Lin, Chin Lung Lu, Hwan-You Chang, Chuan Yi Tang:
An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species. J. Comput. Biol. 12(1): 102-112 (2005) - [j9]Quincy Wu, Chin Lung Lu, Richard Chia-Tung Lee:
The approximability of the weighted Hamiltonian path completion problem on a tree. Theor. Comput. Sci. 341(1-3): 385-397 (2005) - 2004
- [j8]Yin-Te Tsai, Yen Pin Huang, Ching Ta Yu, Chin Lung Lu:
MuSiC: a tool for multiple sequence alignment with constraints. Bioinform. 20(14): 2309-2311 (2004) - 2003
- [j7]Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou:
Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. J. Bioinform. Comput. Biol. 1(2): 267-288 (2003) - [j6]Chin Lung Lu, Sheng-Lung Peng, Chuan Yi Tang:
Efficient minus and signed domination in graphs. Theor. Comput. Sci. 301(1-3): 381-397 (2003) - [j5]Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee:
The full Steiner tree problem. Theor. Comput. Sci. 306(1-3): 55-67 (2003) - [c7]Yen Hung Chen, Chin Lung Lu, Chuan Yi Tang:
On the Full and Bottleneck Full Steiner Tree Problems. COCOON 2003: 122-129 - 2002
- [j4]Chin Lung Lu, Chuan Yi Tang:
Weighted efficient domination problem on some perfect graphs. Discret. Appl. Math. 117(1-3): 163-182 (2002) - [j3]Chin Lung Lu, Ming-Tat Ko, Chuan Yi Tang:
Perfect edge domination and efficient edge domination in graphs. Discret. Appl. Math. 119(3): 227-250 (2002) - [c6]Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee:
The Full Steiner Tree Problem in Phylogeny. COCOON 2002: 107-116 - [c5]Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou:
Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment. CSB 2002: 127-137 - 2001
- [c4]Chin Lung Lu, Zheng-Yao Su, Chuan Yi Tang:
A New Measure of Edit Distance between Labeled Trees. COCOON 2001: 338-348 - 2000
- [c3]Q. S. Wu, Chin Lung Lu, Richard C. T. Lee:
An Approximate Algorithm for the Weighted Hamiltonian Path Completion Problem on a Tree. ISAAC 2000: 156-167 - [c2]Chin Lung Lu, Sheng-Lung Peng, Chuan Yi Tang:
Efficient Minus and Signed Domination in Graphs. ISAAC 2000: 241-253
1990 – 1999
- 1998
- [j2]Chin Lung Lu, Chuan Yi Tang:
Solving the Weighted Efficient Edge Domination Problem on Bipartite Permutation Graphs. Discret. Appl. Math. 87(1-3): 203-211 (1998) - 1997
- [j1]Chin Lung Lu, Chuan Yi Tang:
A Linear-Time Algorithm for the Weighted Feedback Vertex Problem on Interval Graphs. Inf. Process. Lett. 61(2): 107-111 (1997) - [c1]Y. Daniel Liang, Chin Lung Lu, Chuan Yi Tang:
Effincient Domination of Permutation Graphs and Trapezoid Graphs. COCOON 1997: 232-241
Coauthor Index
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