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ORCIDJames C. Whisstock
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2020 – today
- 2022
[j13]Charles Bayly-Jones
, James C. Whisstock:
Mining folded proteomes in the era of accurate structure prediction. PLoS Comput. Biol. 18(3) (2022)- [i1]David Dierickx, Patrick Cleeve, Sergey Gorelick, James C. Whisstock, Alex De Marco:
Juno: a Python-based graphical package for optical system design. CoRR abs/2212.12540 (2022) - 2020
- [c5]Ying Xu, André Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song:
Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning. AMIA 2020 - [c4]Ying Xu, Campbell Wilson, André Leier, Tatiana T. Marquez-Lago, James C. Whisstock, Jiangning Song:
PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy. PAKDD (2) 2020: 384-395
2010 – 2019
- 2019
- [j12]Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song:
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform. 20(6): 2150-2166 (2019) - 2015
- [j11]Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song:
GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome. Bioinform. 31(9): 1411-1419 (2015) - 2014
- [j10]Mingjun Wang, Xing-Ming Zhao, Hao Tan, Tatsuya Akutsu, James C. Whisstock, Jiangning Song:
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets. Bioinform. 30(1): 71-80 (2014) - [j9]Cyril F. Reboul, James C. Whisstock, Michelle A. Dunstone:
A New Model for Pore Formation by Cholesterol-Dependent Cytolysins. PLoS Comput. Biol. 10(8) (2014) - 2012
- [j8]Cyril F. Reboul, Khalid Mahmood, James C. Whisstock, Michelle A. Dunstone:
Predicting giant transmembrane β-barrel architecture. Bioinform. 28(10): 1299-1302 (2012) - 2011
- [j7]Alex D. Stivala, Michael Wybrow, Anthony Wirth, James C. Whisstock, Peter J. Stuckey:
Automatic generation of protein structure cartoons with Pro-origami. Bioinform. 27(23): 3315-3316 (2011) - [j6]Jiangning Song, Hao Tan, Sarah E. Boyd, Hong-Bin Shen, Khalid Mahmood, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock, Robert N. Pike:
Bioinformatic Approaches for Predicting substrates of Proteases. J. Bioinform. Comput. Biol. 9(1): 149-178 (2011) - 2010
- [j5]Jiangning Song, Hao Tan, Hong-Bin Shen, Khalid Mahmood, Sarah E. Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock:
Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Bioinform. 26(6): 752-760 (2010) - [j4]Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock:
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. Bioinform. 26(17): 2076-2084 (2010)
2000 – 2009
- 2009
- [c3]Jason W. Schmidberger, Blair Bethwaite, Colin Enticott, Mark A. Bate, Steve G. Androulakis, Noel G. Faux, Cyril F. Reboul, Jennifer M. N. Phan, James C. Whisstock, Wojtek Goscinski, Slavisa Garic, David Abramson, Ashley M. Buckle:
High-throughput protein structure determination using grid computing. IPDPS 2009: 1-8 - 2007
- [c2]Noel G. Faux, Anthony Beitz, Mark A. Bate, Abdullah A. Amin, Ian Atkinson, Colin Enticott, Khalid Mahmood, Matthew Swift, Andrew E. Treloar, David Abramson, James C. Whisstock, Ashley M. Buckle:
eResearch Solutions for High Throughput Structural Biology. eScience 2007: 221-227 - 2006
- [j3]Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, Ashley M. Buckle:
The REFOLD database: a tool for the optimization of protein expression and refolding. Nucleic Acids Res. 34(Database-Issue): 207-212 (2006) - 2005
- [j2]Sarah E. Boyd, Robert N. Pike, George B. Rudy, James C. Whisstock, Maria J. García de la Banda:
Pops: a Computational Tool for Modeling and Predicting Protease Specificity. J. Bioinform. Comput. Biol. 3(3): 551-586 (2005) - 2004
- [j1]Arun Siddharth Konagurthu, James C. Whisstock, Peter J. Stuckey:
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs. J. Bioinform. Comput. Biol. 2(4): 719-746 (2004) - [c1]Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy:
PoPS: A Computational Tool for Modeling and Predicting Protease Specificity. CSB 2004: 372-381
Coauthor Index
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