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2020 – today
- 2022
[j24]Cunyun Nie
, Haiyuan Yu:
A monotone finite volume element scheme for diffusion equations on triangular grids. Comput. Math. Appl. 105: 1-12 (2022)- 2021
- [j23]Gen Li, Swagata Pahari, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu, Emil Alexov:
SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity. Bioinform. 37(7): 992-999 (2021) - [j22]Yingying Zhang, Shayne D. Wierbowski, Haiyuan Yu:
Combining views for newly sequenced organisms. Nat. Mach. Intell. 3(12): 1011-1012 (2021) - 2020
- [j21]Siqi Liang, Haiyuan Yu, Jonathan D. Wren:
Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach. Bioinform. 36(16): 4490-4497 (2020) - [j20]Chunsheng Feng, Cunyun Nie, Haiyuan Yu, Liping Zhou, Karthikeyan Rajagopal:
A Difference Scheme and Its Error Analysis for a Poisson Equation with Nonlocal Boundary Conditions. Complex. 2020: 6329404:1-6329404:7 (2020)
2010 – 2019
- 2019
- [j19]Sheng Qian, Siqi Liang, Haiyuan Yu:
Leveraging genetic interactions for adverse drug-drug interaction prediction. PLoS Comput. Biol. 15(5) (2019) - 2017
- [j18]Jie Peng, Shi Shu, Haiyuan Yu, Chunsheng Feng, Mingxian Kan, Ganghua Wang:
Error estimates on a finite volume method for diffusion problems with interface on rectangular grids. Appl. Math. Comput. 311: 335-352 (2017) - [j17]Cunyun Nie, Shi Shu, Haiyuan Yu, Wenhua Xia:
Superconvergence and asymptotic expansions for bilinear finite volume element approximation on non-uniform grids. J. Comput. Appl. Math. 321: 323-335 (2017) - [j16]Siwei Chen, Juan F. Beltrán, Clara Esteban-Jurado, Sebastià Franch-Expósito, Sergi Castellví-Bel, Steven Lipkin, Xiaomu Wei, Haiyuan Yu:
GeMSTONE: orchestrated prioritization of human germline mutations in the cloud. Nucleic Acids Res. 45(Webserver-Issue): W207-W214 (2017) - 2016
- [j15]Michael J. Meyer, Philip Geske, Haiyuan Yu:
BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers. Bioinform. 32(10): 1598-1600 (2016) - 2015
- [j14]Cunyun Nie, Haiyuan Yu:
Some error estimates on the large jump asymptotic approach for the interface problem. Appl. Math. Comput. 263: 268-279 (2015) - 2014
- [j13]Cunyun Nie, Shi Shu, Haiyuan Yu, Qianjiang An:
A high order composite scheme for the second order elliptic problem with nonlocal boundary and its fast algorithm. Appl. Math. Comput. 227: 212-221 (2014) - 2013
- [j12]Michael J. Meyer, Jishnu Das, Xiujuan Wang, Haiyuan Yu:
INstruct: a database of high-quality 3D structurally resolved protein interactome networks. Bioinform. 29(12): 1577-1579 (2013) - [j11]Cunyun Nie, Shi Shu, Haiyuan Yu, Yuyue Yang:
Superconvergence and asymptotic expansion for semidiscrete bilinear finite volume element approximation of the parabolic problem. Comput. Math. Appl. 66(1): 91-104 (2013) - [j10]Xiujuan Wang, Bram Thijssen, Haiyuan Yu:
Target Essentiality and Centrality Characterize Drug Side Effects. PLoS Comput. Biol. 9(7) (2013) - 2012
- [j9]Jishnu Das, Jaaved Mohammed, Haiyuan Yu:
Genome-scale analysis of interaction dynamics reveals organization of biological networks. Bioinform. 28(14): 1873-1878 (2012) - [j8]Jishnu Das, Haiyuan Yu:
HINT: High-quality protein interactomes and their applications in understanding human disease. BMC Syst. Biol. 6: 92 (2012)
2000 – 2009
- 2007
- [j7]Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein:
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 23(8): 1048 (2007) - [j6]Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein:
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinform. 23(16): 2163-2173 (2007) - [j5]Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein:
The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics. PLoS Comput. Biol. 3(4) (2007) - 2006
- [j4]Shi Shu, Jinchao Xu, Ying Yang, Haiyuan Yu:
An algebraic multigrid method for finite element systems on criss-cross grids. Adv. Comput. Math. 25(1-3): 287-304 (2006) - [j3]Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein:
Predicting interactions in protein networks by completing defective cliques. Bioinform. 22(7): 823-829 (2006) - [j2]Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin H. Schultz, Mark Gerstein:
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks. Bioinform. 22(23): 2968-2970 (2006) - 2005
- [p1]Long J. Lu, Yu Xia, Haiyuan Yu, Alexander Rives, Haoxin Lu, Falk Schubert, Mark Gerstein:
Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis. Data Analysis and Visualization in Genomics and Proteomics 2005: 61-81 - 2003
- [j1]Jiang Qian, C. Jimmy Lin, Nicholas M. Luscombe, Haiyuan Yu, Mark Gerstein:
Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinform. 19(15): 1917-1926 (2003)
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