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ORCIDZexian Liu
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2020 – today
- 2024
[j44]Taiyong Song, Zexian Liu:
An Efficient Subspace Minimization Conjugate Gradient Method for Solving Nonlinear Monotone Equations with Convex Constraints. Axioms 13(3): 170 (2024)- [j43]Taiyong Song, Zexian Liu
:
An efficient inertial subspace minimization CG algorithm with convergence rate analysis for constrained nonlinear monotone equations. J. Comput. Appl. Math. 446: 115873 (2024) - [j42]Hongwei Liu, Ting Wang, Zexian Liu:
A nonmonotone accelerated proximal gradient method with variable stepsize strategy for nonsmooth and nonconvex minimization problems. J. Glob. Optim. 89(4): 863-897 (2024) - [j41]Zexian Liu, Yan Ni, Hongwei Liu, Wumei Sun:
A New Subspace Minimization Conjugate Gradient Method for Unconstrained Minimization. J. Optim. Theory Appl. 200(2): 820-851 (2024) - 2023
- [j40]Kai Yu, Zekun Liu, Haoyang Cheng, Shihua Li, Qingfeng Zhang, Jia Liu, Huai-Qiang Ju, Zhixiang Zuo, Qi Zhao, Shiyang Kang, Zexian Liu:
dSCOPE: a software to detect sequences critical for liquid-liquid phase separation. Briefings Bioinform. 24(1) (2023) - [j39]Zexian Liu, Panqin Wang, Qingfeng Zhang, Shihua Li, Yuxin Zhang, Yutong Guo, Chongchong Jia, Tian Shao, Lin Li, Han Cheng, Zhenlong Wang:
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals. Genom. Proteom. Bioinform. 21(2): 267-277 (2023) - [j38]Wumei Sun, Hongwei Liu, Zexian Liu:
A regularized limited memory subspace minimization conjugate gradient method for unconstrained optimization. Numer. Algorithms 94(4): 1919-1948 (2023) - [j37]Kai Yu, Ye Wang, Yongqiang Zheng, Zekun Liu, Qingfeng Zhang, Siyu Wang, Qi Zhao, Xiaolong Zhang, Xiaoxing Li, Rui-Hua Xu, Zexian Liu:
qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast. Nucleic Acids Res. 51(D1): 479-487 (2023) - 2022
- [j36]Jing J. Liang, Zong-Wei Li, Cai-Tong Yue, Zhuo Hu, Han Cheng, Zexian Liu, Weifeng Guo:
Multi-modal optimization to identify personalized biomarkers for disease prediction of individual patients with cancer. Briefings Bioinform. 23(5) (2022) - [j35]Hongwei Liu, Ting Wang, Zexian Liu:
Some modified fast iterative shrinkage thresholding algorithms with a new adaptive non-monotone stepsize strategy for nonsmooth and convex minimization problems. Comput. Optim. Appl. 83(2): 651-691 (2022) - [j34]Wumei Sun, Hongwei Liu, Zexian Liu:
Several accelerated subspace minimization conjugate gradient methods based on regularization model and convergence rate analysis for nonconvex problems. Numer. Algorithms 91(4): 1677-1719 (2022) - [j33]Han Xue, Qingfeng Zhang, Panqin Wang, Bijin Cao, Chongchong Jia, Ben Cheng, Yuhua Shi, Weifeng Guo, Zhenlong Wang, Zexian Liu, Han Cheng:
qPTMplants: an integrative database of quantitative post-translational modifications in plants. Nucleic Acids Res. 50(D1): 1491-1499 (2022) - [j32]Zexian Liu, Wangli Chu, Hongwei Liu:
An efficient gradient method with approximately optimal stepsizes based on regularization models for unconstrained optimization. RAIRO Oper. Res. 56(4): 2403-2424 (2022) - 2021
- [j31]Qingfeng Zhang, Kai Yu, Shihua Li, Xiaolong Zhang, Qi Zhao, Xia Zhao, Zekun Liu, Han Cheng, Zexian Liu, Xiaoxing Li:
gutMEGA: a database of the human gut MEtaGenome Atlas. Briefings Bioinform. 22(3) (2021) - [j30]Panqin Wang, Qingfeng Zhang, Shihua Li, Ben Cheng, Han Xue, Zhen Wei, Tian Shao, Zexian Liu, Han Cheng, Zhenlong Wang:
iCysMod: an integrative database for protein cysteine modifications in eukaryotes. Briefings Bioinform. 22(5) (2021) - [j29]Bo Liu, Qingfeng Zhang, Jingou Wang, Shumin Cao, Zhiyuan Zhou, Zexian Liu, Han Cheng:
iCAV: an integrative database of cancer-associated viruses. Database J. Biol. Databases Curation 2021 (2021) - [j28]Wumei Sun, Hongwei Liu, Zexian Liu:
A Class of Accelerated Subspace Minimization Conjugate Gradient Methods. J. Optim. Theory Appl. 190(3): 811-840 (2021) - [j27]Ting Zhao, Hongwei Liu, Zexian Liu:
New subspace minimization conjugate gradient methods based on regularization model for unconstrained optimization. Numer. Algorithms 87(4): 1501-1534 (2021) - 2020
- [j26]Kai Yu, Qingfeng Zhang, Zekun Liu, Yimeng Du, Xinjiao Gao, Qi Zhao, Han Cheng, Xiaoxing Li, Zexian Liu:
Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation. Briefings Bioinform. 21(5): 1798-1805 (2020) - [j25]Qi Zhao, Yu Sun, Zekun Liu, Hongwan Zhang, Xingyang Li, Kaiyu Zhu, Zexian Liu, Jian Ren, Zhixiang Zuo:
CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect. Briefings Bioinform. 21(5): 1818-1824 (2020) - [j24]Xinliu Diao, Hongwei Liu, Zexian Liu:
A new subspace minimization conjugate gradient method based on modified secant equation for unconstrained optimization. Comput. Appl. Math. 39(4) (2020) - [j23]Zexian Liu, Hongwei Liu, Yu-Hong Dai:
An improved Dai-Kou conjugate gradient algorithm for unconstrained optimization. Comput. Optim. Appl. 75(1): 145-167 (2020) - [j22]Liya Zhu, Han Cheng, Guoqing Peng, Shuansuo Wang, Zhiguo Zhang, Erdong Ni, Xiangdong Fu, Chuxiong Zhuang, Zexian Liu, Hai Zhou:
Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation in Rice Young Panicles. Genom. Proteom. Bioinform. 18(3): 305-320 (2020)
2010 – 2019
- 2019
- [j21]Yufei Li, Zexian Liu, Hongwei Liu:
A subspace minimization conjugate gradient method based on conic model for unconstrained optimization. Comput. Appl. Math. 38(1) (2019) - [j20]Zexian Liu, Hongwei Liu, Xiping Wang:
Accelerated augmented Lagrangian method for total variation minimization. Comput. Appl. Math. 38(2) (2019) - [j19]Ting Wang, Zexian Liu, Hongwei Liu:
A new subspace minimization conjugate gradient method based on tensor model for unconstrained optimization. Int. J. Comput. Math. 96(10): 1924-1942 (2019) - [j18]Hongwei Liu, Zexian Liu:
An Efficient Barzilai-Borwein Conjugate Gradient Method for Unconstrained Optimization. J. Optim. Theory Appl. 180(3): 879-906 (2019) - [j17]Zexian Liu, Hongwei Liu:
An Efficient Gradient Method with Approximately Optimal Stepsize Based on Tensor Model for Unconstrained Optimization. J. Optim. Theory Appl. 181(2): 608-633 (2019) - [j16]Kai Yu, Qingfeng Zhang, Zekun Liu, Qi Zhao, Xiaolong Zhang, Yan Wang, Zi-Xian Wang, Ying Jin, Xiaoxing Li, Zexian Liu, Rui-Hua Xu:
qPhos: a database of protein phosphorylation dynamics in humans. Nucleic Acids Res. 47(Database-Issue): D451-D458 (2019) - [j15]Xiao-Liang Dong, Zexian Liu, Hong-Wei Liu, Xiang-Li Li:
An efficient adaptive three-term extension of the Hestenes-Stiefel conjugate gradient method. Optim. Methods Softw. 34(3): 546-559 (2019) - 2018
- [j14]Zexian Liu, Hongwei Liu:
Several efficient gradient methods with approximate optimal stepsizes for large scale unconstrained optimization. J. Comput. Appl. Math. 328: 400-413 (2018) - [j13]Zexian Liu, Hongwei Liu:
An efficient gradient method with approximate optimal stepsize for large-scale unconstrained optimization. Numer. Algorithms 78(1): 21-39 (2018) - [j12]Ming Li, Hongwei Liu, Zexian Liu:
A new subspace minimization conjugate gradient method with nonmonotone line search for unconstrained optimization. Numer. Algorithms 79(1): 195-219 (2018) - [j11]Hongwei Liu, Zexian Liu, Xiaoliang Dong:
A new adaptive Barzilai and Borwein method for unconstrained optimization. Optim. Lett. 12(4): 845-873 (2018) - 2015
- [j10]Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Jian Ren, Zexian Liu, Yu Xue:
dbPSP: a curated database for protein phosphorylation sites in prokaryotes. Database J. Biol. Databases Curation 2015 (2015) - [j9]Zhengnan Huang, Lili Ma, Yongbo Wang, Zhicheng Pan, Jian Ren, Zexian Liu, Yu Xue:
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle. Nucleic Acids Res. 43(Database-Issue): 328-334 (2015) - 2014
- [j8]Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue:
dbPPT: a comprehensive database of protein phosphorylation in plants. Database J. Biol. Databases Curation 2014 (2014) - [j7]Yongbo Wang, Zexian Liu, Han Cheng, Tianshun Gao, Zhicheng Pan, Qing Yang, Anyuan Guo, Yu Xue:
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. Nucleic Acids Res. 42(Database-Issue): 496-502 (2014) - [j6]Zexian Liu, Yongbo Wang, Tianshun Gao, Zhicheng Pan, Han Cheng, Qing Yang, Zhongyi Cheng, Anyuan Guo, Jian Ren, Yu Xue:
CPLM: a database of protein lysine modifications. Nucleic Acids Res. 42(Database-Issue): 531-536 (2014) - [j5]Qi Zhao, Yubin Xie, Yueyuan Zheng, Shuai Jiang, Wenzhong Liu, Weiping Mu, Zexian Liu, Yong Zhao, Yu Xue, Jian Ren:
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs. Nucleic Acids Res. 42(Webserver-Issue): 325-330 (2014) - 2013
- [j4]Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue:
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. Briefings Bioinform. 14(3): 344-360 (2013) - [j3]Tianshun Gao, Zexian Liu, Yongbo Wang, Han Cheng, Qing Yang, Anyuan Guo, Jian Ren, Yu Xue:
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. Nucleic Acids Res. 41(Database-Issue): 445-451 (2013) - 2011
- [j2]Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen, Xiangjiao Yang, Xuebiao Yao, Jian Ren, Yu Xue:
CPLA 1.0: an integrated database of protein lysine acetylation. Nucleic Acids Res. 39(Database-Issue): 1029-1034 (2011) - 2010
- [j1]Jian Ren, Zexian Liu, Xinjiao Gao, Changjiang Jin, Mingliang Ye, Hanfa Zou, Longping Wen, Zhaolei Zhang, Yu Xue, Xuebiao Yao:
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res. 38(Database-Issue): 155-160 (2010)
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