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ORCIDPietro Di Lena
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- affiliation: University of Bologna, Department of Computer Science and Engineering
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Journal Articles
- 2024
[j30]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational methods for analysis of DNA methylation data, volume II. Frontiers Bioinform. 4 (2024)- [j29]Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Ìtalo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio
, Claudio Franceschi, Gastone C. Castellani, Paolo Garagnani, Christine Nardini:
Where are we in the implementation of tissue-specific epigenetic clocks? Frontiers Bioinform. 4 (2024) - 2022
- [j28]Pietro Di Lena, Claudia Sala, Christine Nardini:
Evaluation of different computational methods for DNA methylation-based biological age. Briefings Bioinform. 23(4) (2022) - [j27]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational Methods for Analysis of DNA Methylation Data. Frontiers Bioinform. 2 (2022) - 2021
- [j26]Pietro Di Lena, Pierre Baldi:
Fold recognition by scoring protein maps using the congruence coefficient. Bioinform. 37(4): 506-513 (2021) - [j25]Pietro Di Lena, Claudia Sala, Christine Nardini:
Estimage: a webserver hub for the computation of methylation age. Nucleic Acids Res. 49(Webserver-Issue): 199-206 (2021) - 2020
- [j24]Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini:
Methylation data imputation performances under different representations and missingness patterns. BMC Bioinform. 21(1): 268 (2020) - [j23]Pietro Di Lena:
Topological dynamics of Nondeterministic Cellular Automata. Inf. Comput. 274: 104532 (2020) - 2019
- [j22]Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini:
Missing value estimation methods for DNA methylation data. Bioinform. 35(19): 3786-3793 (2019) - [j21]Giovanni Delnevo, Pietro Di Lena, Silvia Mirri, Catia Prandi, Paola Salomoni:
On combining Big Data and machine learning to support eco-driving behaviours. J. Big Data 6: 64 (2019) - 2016
- [j20]Samuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
NET-GE: a web-server for NETwork-based human gene enrichment. Bioinform. 32(22): 3489-3491 (2016) - 2015
- [j19]Jennifer E. Dent, Valentina Devescovi, Han Li, Pietro Di Lena, Youtao Lu, Yuanhua Liu, Christine Nardini:
Mechanotransduction map: simulation model, molecular pathway, gene set. Bioinform. 31(7): 1053-1059 (2015) - [j18]Pietro di Lena, Giacomo Domeniconi, Luciano Margara, Gianluca Moro:
GOTA: GO term annotation of biomedical literature. BMC Bioinform. 16: 346:1-346:13 (2015) - 2014
- [j17]Pietro Di Lena, Luciano Margara:
Nondeterministic Cellular Automata. Inf. Sci. 287: 13-25 (2014) - 2013
- [j16]Pietro Di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini:
MIMO: an efficient tool for molecular interaction maps overlap. BMC Bioinform. 14: 159 (2013) - [j15]Alberto Dennunzio, Pietro Di Lena, Enrico Formenti, Luciano Margara:
Periodic Orbits and Dynamical Complexity in Cellular Automata. Fundam. Informaticae 126(2-3): 183-199 (2013) - 2012
- [j14]Pietro di Lena, Ken Nagata, Pierre Baldi:
Deep architectures for protein contact map prediction. Bioinform. 28(19): 2449-2457 (2012) - [j13]Pietro di Lena, Luciano Margara:
On the Undecidability of Attractor Properties for Cellular Automata. Fundam. Informaticae 115(1): 75-85 (2012) - 2011
- [j12]Marco Vassura, Pietro di Lena, Luciano Margara, Maria Mirto, Giovanni Aloisio, Piero Fariselli, Rita Casadio:
Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure. BioData Min. 4: 1 (2011) - [j11]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 1017-1028 (2011) - 2010
- [j10]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Fast overlapping of protein contact maps by alignment of eigenvectors. Bioinform. 26(18): 2250-2258 (2010) - [j9]Pietro di Lena, Luciano Margara:
Optimal global alignment of signals by maximization of Pearson correlation. Inf. Process. Lett. 110(16): 679-686 (2010) - [j8]Pietro di Lena, Luciano Margara:
On the undecidability of the limit behavior of Cellular Automata. Theor. Comput. Sci. 411(7-9): 1075-1084 (2010) - 2009
- [j7]Pietro di Lena, Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio:
On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. Algorithms 2(1): 76-92 (2009) - [j6]Alberto Dennunzio, Pietro di Lena, Enrico Formenti, Luciano Margara:
On the directional dynamics of additive cellular automata. Theor. Comput. Sci. 410(47-49): 4823-4833 (2009) - 2008
- [j5]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinform. 24(10): 1313-1315 (2008) - [j4]Pietro di Lena, Luciano Margara:
Computational complexity of dynamical systems: The case of cellular automata. Inf. Comput. 206(9-10): 1104-1116 (2008) - [j3]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures From Protein Contact Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 357-367 (2008) - 2007
- [j2]Pietro di Lena:
On Computing the Topological Entropy of One-sided Cellular Automata. J. Cell. Autom. 2(2): 121-130 (2007) - [j1]Pietro di Lena, Luciano Margara:
Row Subshifts and Topological Entropy of Cellular Automata. J. Cell. Autom. 2(2): 131-140 (2007)
Conference and Workshop Papers
- 2017
- [c12]Pietro Di Lena:
Equicontinuity and Sensitivity of Nondeterministic Cellular Automata. AUTOMATA 2017: 81-96 - [c11]Pietro Di Lena, Silvia Mirri, Catia Prandi, Paola Salomoni, Giovanni Delnevo:
In-vehicle Human Machine Interface: An Approach to Enhance Eco-Driving Behaviors. SmartObject@IUI 2017: 7-12 - 2012
- [c10]Pietro Di Lena, Pierre Baldi, Ken Nagata:
Deep Spatio-Temporal Architectures and Learning for Protein Structure Prediction. NIPS 2012: 521-529 - [c9]Alberto Dennunzio, Pietro di Lena, Luciano Margara:
Strictly Temporally Periodic Points in Cellular Automata. AUTOMATA & JAC 2012: 225-235 - 2009
- [c8]Pietro di Lena, Luciano Margara:
Undecidable Properties of Limit Set Dynamics of Cellular Automata. STACS 2009: 337-347 - [c7]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72 - 2008
- [c6]Pietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio:
A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221 - [c5]Alberto Dennunzio, Pietro di Lena, Enrico Formenti, Luciano Margara:
Classification of directional dynamics for additive cellular automata. JAC 2008: 40-53 - 2007
- [c4]Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589 - [c3]Pietro di Lena, Luciano Margara:
Computational Complexity of Dynamical Systems: the case of Cellular Automata. LATA 2007: 211-222 - [c2]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37 - 2006
- [c1]Pietro di Lena:
Decidable Properties for Regular Cellular Automata. IFIP TCS 2006: 185-196
Parts in Books or Collections
- 2011
- [p1]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Divide and Conquer Strategies for Protein Structure Prediction. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 23-46
Coauthor Index
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