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ORCIDCarson M. Andorf
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2020 – today
- 2024
[j18]Carson M. Andorf
, Olivia C. Haley, Rita K. Hayford, John L. Portwood II, Stephen Harding, Shatabdi Sen, Ethalinda K. S. Cannon, Jack M. Gardiner, Hye-Seon Kim, Margaret Woodhouse:
PanEffect: a pan-genome visualization tool for variant effects in maize. Bioinform. 40(2) (2024)- 2023
- [j17]Shatabdi Sen, Margaret Woodhouse, John L. Portwood II, Carson M. Andorf:
Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j16]Kyoung Tak Cho, Taner Z. Sen, Carson M. Andorf:
Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach. Frontiers Artif. Intell. 5: 830170 (2022) - 2021
- [j15]Margaret Woodhouse, Shatabdi Sen, David A. Schott, John L. Portwood II, Michael Freeling, Justin W. Walley, Carson M. Andorf, James C. Schnable:
qTeller: a tool for comparative multi-genomic gene expression analysis. Bioinform. 38(1): 236-242 (2021) - [j14]Sagnik Banerjee, Priyanka Bhandary, Margaret Woodhouse, Taner Z. Sen, Roger P. Wise, Carson M. Andorf:
FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. BMC Bioinform. 22(1): 205 (2021) - 2020
- [c4]Sagnik Banerjee, Margaret Woodhouse, Roger P. Wise, Priyanka Bhandary, Taner Z. Sen, Carson M. Andorf:
FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data. BCB 2020: 79:1-79:2
2010 – 2019
- 2019
- [j13]Bremen L. Braun, David A. Schott, John L. Portwood II, Carson M. Andorf, Taner Z. Sen:
PedigreeNet: a web-based pedigree viewer for biological databases. Bioinform. 35(20): 4184-4186 (2019) - [j12]John L. Portwood II, Margaret Woodhouse, Ethalinda K. S. Cannon, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Jesse R. Walsh, Taner Z. Sen, Kyoung Tak Cho, David A. Schott, Bremen L. Braun, Miranda Dietze, Brittney Dunfee, Christine G. Elsik, Nancy Manchanda, Ed Coe, Marty Sachs, Philip Stinard, Josh Tolbert, Shane Zimmerman, Carson M. Andorf:
MaizeGDB 2018: the maize multi-genome genetics and genomics database. Nucleic Acids Res. 47(Database-Issue): D1146-D1154 (2019) - 2018
- [j11]David A. Schott, Abhinav G. Vinnakota, John L. Portwood II, Carson M. Andorf, Taner Z. Sen:
SNPversity: a web-based tool for visualizing diversity. Database J. Biol. Databases Curation 2018: bay037 (2018) - [j10]Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main:
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - [j9]Naihui Zhou, Zachary D. Siegel, Scott Zarecor, Nigel Lee, Darwin A. Campbell, Carson M. Andorf, Dan Nettleton, Carolyn J. Lawrence-Dill, Baskar Ganapathysubramanian, Jonathan W. Kelly, Iddo Friedberg:
Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning. PLoS Comput. Biol. 14(7) (2018) - 2017
- [j8]Taner Z. Sen, Bremen L. Braun, David A. Schott, John L. Portwood II, Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Ethalinda K. S. Cannon, Carson M. Andorf:
Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation. Database J. Biol. Databases Curation 2017: bax031 (2017) - 2016
- [j7]Carson M. Andorf, Ethalinda K. S. Cannon, John L. Portwood II, Jack M. Gardiner, Lisa C. Harper, Mary L. Schaeffer, Bremen L. Braun, Darwin A. Campbell, Abhinav G. Vinnakota, Venktanaga V. Sribalusu, Miranda Huerta, Kyoung Tak Cho, Kokulapalan Wimalanathan, Jacqueline D. Richter, Emily D. Mauch, Bhavani S. Rao, Scott M. Birkett, Taner Z. Sen, Carolyn J. Lawrence-Dill:
MaizeGDB update: new tools, data and interface for the maize model organism database. Nucleic Acids Res. 44(Database-Issue): 1195-1201 (2016) - 2011
- [j6]Lisa C. Harper, Mary L. Schaeffer, Jordan Thistle, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Bremen L. Braun, Scott M. Birkett, Carolyn J. Lawrence, Taner Z. Sen:
The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video. Database J. Biol. Databases Curation 2011 (2011) - [j5]Mary L. Schaeffer, Lisa C. Harper, Jack M. Gardiner, Carson M. Andorf, Darwin A. Campbell, Ethalinda K. S. Cannon, Taner Z. Sen, Carolyn J. Lawrence:
MaizeGDB: curation and outreach go hand-in-hand. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j4]Taner Z. Sen, Lisa C. Harper, Mary L. Schaeffer, Carson M. Andorf, Trent E. Seigfried, Darwin A. Campbell, Carolyn J. Lawrence:
Choosing a genome browser for a Model Organism Database: surveying the Maize community. Database J. Biol. Databases Curation 2010 (2010) - [j3]Carson M. Andorf, Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Darwin A. Campbell, Taner Z. Sen:
The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps. Bioinform. 26(3): 434-436 (2010)
2000 – 2009
- 2009
- [j2]Taner Z. Sen, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, Michael E. Sparks, Jon Duvick, Volker P. Brendel, Ethalinda K. S. Cannon, Darwin A. Campbell, Carolyn J. Lawrence:
MaizeGDB becomes 'sequence-centric'. Database J. Biol. Databases Curation 2009 (2009) - 2007
- [j1]Carson M. Andorf, Drena Dobbs, Vasant G. Honavar:
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. BMC Bioinform. 8 (2007) - 2005
- [c3]Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar:
Information Integration from Semantically Heterogeneous Biological Data Sources. DEXA Workshops 2005: 580-584 - [c2]Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant G. Honavar:
Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. DILS 2005: 175-190 - 2002
- [c1]Carson M. Andorf, Drena Dobbs, Vasant G. Honavar:
Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences. JCIS 2002: 1200-1206
Coauthor Index
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