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2020 – today
- 2023
[j12]Anowarul Kabir, Manish Bhattarai
, Kim Ø. Rasmussen, Amarda Shehu, Anny Usheva, Alan R. Bishop, Boian S. Alexandrov:
Examining DNA breathing with pyDNA-EPBD. Bioinform. 39(10) (2023)- 2020
- [j11]Christie L. Alappat, Achim Basermann, Alan R. Bishop, Holger Fehske, Georg Hager, Olaf Schenk, Jonas Thies, Gerhard Wellein:
A Recursive Algebraic Coloring Technique for Hardware-efficient Symmetric Sparse Matrix-vector Multiplication. ACM Trans. Parallel Comput. 7(3): 19:1-19:37 (2020) - [c3]Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein:
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors. ISC 2020: 412-433 - [i5]Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein:
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors. CoRR abs/2002.03344 (2020)
2010 – 2019
- 2019
- [i4]Christie L. Alappat, Georg Hager, Olaf Schenk, Jonas Thies, Achim Basermann, Alan R. Bishop, Holger Fehske, Gerhard Wellein:
A Recursive Algebraic Coloring Technique for Hardware-Efficient Symmetric Sparse Matrix-Vector Multiplication. CoRR abs/1907.06487 (2019) - 2018
- [c2]Moritz Kreutzer, Dominik Ernst, Alan R. Bishop, Holger Fehske, Georg Hager, Kengo Nakajima, Gerhard Wellein:
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. ISC 2018: 329-349 - [i3]Moritz Kreutzer, Georg Hager, Dominik Ernst, Holger Fehske, Alan R. Bishop, Gerhard Wellein:
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. CoRR abs/1803.02156 (2018) - 2016
- [j10]Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, Boian S. Alexandrov:
The role of structural parameters in DNA cyclization. BMC Bioinform. 17: 68 (2016) - [p1]Moritz Kreutzer, Jonas Thies, Andreas Pieper, Andreas Alvermann, Martin Galgon, Melven Röhrig-Zöllner, Faisal Shahzad, Achim Basermann, Alan R. Bishop, Holger Fehske, Georg Hager, Bruno Lang, Gerhard Wellein:
Performance Engineering and Energy Efficiency of Building Blocks for Large, Sparse Eigenvalue Computations on Heterogeneous Supercomputers. Software for Exascale Computing 2016: 317-338 - 2014
- [j9]Alexander I. Nesterov, Gennady P. Berman, Juan C. Beas Zepeda, Alan R. Bishop:
Non-Hermitian quantum annealing in the antiferromagnetic Ising chain. Quantum Inf. Process. 13(2): 371-389 (2014) - [j8]Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop:
A Unified Sparse Matrix Data Format for Efficient General Sparse Matrix-Vector Multiplication on Modern Processors with Wide SIMD Units. SIAM J. Sci. Comput. 36(5) (2014) - 2013
- [j7]Kristy Nowak-Lovato, Ludmil B. Alexandrov, Afsheen Banisadr, Amy L. Bauer, Alan R. Bishop, Anny Usheva, Fangping Mu, Elizabeth Hong-Geller, Kim Ø. Rasmussen, William S. Hlavacek, Boian S. Alexandrov:
Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. PLoS Comput. Biol. 9(1) (2013) - [i2]Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop:
A unified sparse matrix data format for modern processors with wide SIMD units. CoRR abs/1307.6209 (2013) - 2012
- [c1]Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop:
Sparse Matrix-vector Multiplication on GPGPU Clusters: A New Storage Format and a Scalable Implementation. IPDPS Workshops 2012: 1696-1702 - 2011
- [i1]Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop:
Sparse matrix-vector multiplication on GPGPU clusters: A new storage format and a scalable implementation. CoRR abs/1112.5588 (2011)
2000 – 2009
- 2009
- [j6]Boian S. Alexandrov, Vladimir Gelev, Sang Wook Yoo, Alan R. Bishop, Kim Ø. Rasmussen, Anny Usheva:
Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter. PLoS Comput. Biol. 5(3) (2009) - 2007
- [j5]Ricardo Carretero-González, Panayotis G. Kevrekidis, Dimitri J. Frantzeskakis, Boris A. Malomed, S. Nandi, Alan R. Bishop:
Soliton trains and vortex streets as a form of Cerenkov radiation in trapped Bose-Einstein condensates. Math. Comput. Simul. 74(4-5): 361-369 (2007) - [j4]Panayotis G. Kevrekidis, Avinash Khare, Avadh Saxena, I. Bena, Alan R. Bishop:
Asymptotic calculation of discrete non-linear wave interactions. Math. Comput. Simul. 74(4-5): 405-413 (2007) - [j3]K. B. Blagoev, Bogdan Mihaila, B. J. Travis, Ludmil B. Alexandrov, Alan R. Bishop, Douglas M. Ranken, Stefan Posse, Charles Gasparovic, Andy R. Mayer, Cheryl J. Aine, István Ulbert, M. Morita, W. Müller, J. Connor, Eric Halgren:
Modelling the magnetic signature of neuronal tissue. NeuroImage 37(1): 137-148 (2007) - 2005
- [j2]Panayotis G. Kevrekidis, Boris A. Malomed, Dimitri J. Frantzeskakis, Alan R. Bishop, Hector E. Nistazakis, Ricardo Carretero-González:
Domain walls of single-component Bose-Einstein condensates in external potentials. Math. Comput. Simul. 69(3-4): 334-345 (2005)
1990 – 1999
- 1998
- [j1]Ángel Sánchez, Alan R. Bishop:
Collective Coordinates and Length-Scale Competition in Spatially Inhomogeneous Soliton-Bearing Equations. SIAM Rev. 40(3): 579-615 (1998)
Coauthor Index
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