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Journal Articles

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2023
[j10]
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Javier Castell-Díaz, José Antonio Miñarro-Giménez, Catalina Martínez-Costa:
Supporting SNOMED CT postcoordination with knowledge graph embeddings. J. Biomed. Informatics 139: 104297 (2023)
2022
[j9]
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Philip van Damme, Jesualdo Tomás Fernández-Breis, Nirupama Benis, José Antonio Miñarro-Giménez, Nicolette F. de Keizer, Ronald Cornet:
Performance assessment of ontology matching systems for FAIR data. J. Biomed. Semant. 13(1): 19 (2022)
2019
[j8]
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José Antonio Miñarro-Giménez, Ronald Cornet, Marie-Christine Jaulent, Heike Dewenter, Sylvia Thun, Kirstine Rosenbeck Gøeg, Daniel Karlsson, Stefan Schulz:
Quantitative analysis of manual annotation of clinical text samples. Int. J. Medical Informatics 123: 37-48 (2019)
2016
[j7]
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María Del Carmen Legaz-García, José Antonio Miñarro-Giménez, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis:
Generation of open biomedical datasets through ontology-driven transformation and integration processes. J. Biomed. Semant. 7: 32 (2016)
2015
[j6]
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Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier:
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. 15: 12 (2015)
2014
[j5]
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José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Boris Villazón-Terrazas, Jesualdo Tomás Fernández-Breis:
Translational research combining orthologous genes and human diseases with the OGOLOD dataset. Semantic Web 5(2): 145-149 (2014)
2013
[j4]
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  - journals/jucs/MorenoHRMVA13
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Carlos García Moreno, Yolanda Hernández-González, Miguel Ángel Rodríguez-García, José Antonio Miñarro-Giménez, Rafael Valencia-García, Ángela Almela:
A Semantic based Platform for Research and Development Projects Management in the ICT Domain. J. Univers. Comput. Sci. 19(13): 1914-1939 (2013)
2012
[j3]
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José Alberto Maldonado, Catalina Martínez-Costa, David Moner, Marcos Menárguez Tortosa, Diego Boscá, José Antonio Miñarro-Giménez, Jesualdo Tomás Fernández-Breis, Montserrat Robles:
Using the ResearchEHR platform to facilitate the practical application of the EHR standards. J. Biomed. Informatics 45(4): 746-762 (2012)
2011
[j2]
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José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Rodrigo Martínez-Béjar, Jesualdo Tomás Fernández-Breis, Marisa Madrid:
Semantic integration of information about orthologs and diseases: The OGO system. J. Biomed. Informatics 44(6): 1020-1031 (2011)
2009
[j1]
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José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis:
OGO: an ontological approach for integrating knowledge about orthology. BMC Bioinform. 10(S-10): 13 (2009)

Conference and Workshop Papers

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2023
[c29]
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José Antonio Miñarro-Giménez, Carlos Fernández-Llatas, Begoña Martínez-Salvador, Catalina Martínez-Costa, Mar Marcos, Jesualdo Tomás Fernández-Breis:
Ontology Model for Supporting Process Mining on Healthcare-Related Data. AIME 2023: 352-356
[c28]
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José Antonio García-Díaz, José Antonio Miñarro-Giménez, Ángela Almela, Gema Alcaraz-Mármol, María José Marín-Pérez, Francisco García-Sánchez, Rafael Valencia-García:
AIInFunds. Intelligent Services for Monitoring Tendencies of Alternative Investment Funds. SEPLN (Projects and Demonstrations) 2023: 55-59
[c27]
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José Antonio García-Díaz, José Antonio Miñarro-Giménez, Ángela Almela, Gema Alcaraz-Mármol, María José Marín-Pérez, Francisco García-Sánchez, Rafael Valencia-García:
FD. A Platform for Monitoring Financial and Economic Information towards Alternative Investment Funds. SEPLN (Projects and Demonstrations) 2023: 93-97
2019
[c26]
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Catalina Martínez-Costa, José Antonio Miñarro-Giménez, Robert R. Hausam, Stefan Schulz:
Addressing the Negation Gap in SNOMED CT by Reified Negated Concepts. JOWO 2019
2018
[c25]
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José Antonio Miñarro-Giménez, Stefan Schulz:
Analysis of MeSH Indexing Patterns and Frequency of Predicates. MIE 2018: 666-670
2017
[c24]
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Stefan Schulz, Catalina Martínez-Costa, José Antonio Miñarro-Giménez:
Lexical Ambiguity in SNOMED CT. JOWO 2017
2016
[c23]
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Markus Kreuzthaler, José Antonio Miñarro-Giménez, Stefan Schulz:
MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH. MIE 2016: 582-586
[c22]
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José Antonio Miñarro-Giménez, Manuel Quesada-Martínez, Jesualdo Tomás Fernández-Breis, Stefan Schulz:
Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE. MIE 2016: 765-769
[c21]
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José Antonio Miñarro-Giménez, Catalina Martínez-Costa, Stefan Schulz:
Qualitative assessment of annotations using SNOMED CT. ODLS 2016: 1-2
2015
[c20]
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José Antonio Miñarro-Giménez, Markus Kreuzthaler, Stefan Schulz:
Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing. AMIA 2015
[c19]
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José Antonio Miñarro-Giménez, Markus Kreuzthaler, Johannes Bernhardt-Melischnig, Catalina Martínez-Costa, Stefan Schulz:
Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations. MedInfo 2015: 716-720
[c18]
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María Del Carmen Legaz-García, José Antonio Miñarro-Giménez, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis:
Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies. MIE 2015: 165-169
[c17]
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José Antonio Miñarro-Giménez, Johannes Hellrich, Stefan Schulz:
Acquisition of Character Translation Rules for Supporting SNOMED CT Localizations. MIE 2015: 597-601
2014
[c16]
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Matthias Samwald, José Antonio Miñarro-Giménez, Kathrin Blagec, Klaus-Peter Adlassnig:
Towards a Global IT System for Personalized Medicine: the Medicine Safety Code Initiative. eHealth 2014: 25-31
[c15]
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Matthias Samwald, José Antonio Miñarro-Giménez, Kathrin Blagec, Klaus-Peter Adlassnig:
Towards a global IT system for personalized medicine: the Medicine Safety Code initiative. MIE 2014: 261-265
[c14]
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José Antonio Miñarro-Giménez, Oscar Marín-Alonso, Matthias Samwald:
Exploring the Application of Deep Learning Techniques on Medical Text Corpora. MIE 2014: 584-588
[c13]
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María Del Carmen Legaz-García, Catalina Martínez-Costa, José Antonio Miñarro-Giménez, Jesualdo Tomás Fernández-Breis, Stefan Schulz, Marcos Menárguez Tortosa:
Ontology patterns-based transformation of clinical information. MIE 2014: 1018-1022
[c12]
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José Antonio Miñarro-Giménez, Catalina Martínez-Costa, Stefan Schulz:
Using concept co-occurrences for a biomedical facts acquisition. MIE 2014: 1200
[c11]
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Jeroen S. de Bruin, José Antonio Miñarro-Giménez, Matthias Samwald, Oscar Marín-Alonso:
Visualising topic networks in infection control using word vector analysis. MIE 2014: 1227
[c10]
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José Antonio Miñarro-Giménez, Matthias Samwald:
An Update on Genomic CDS, a Complex Ontology for Pharmacogenomics and Clinical Decision Support. ORE 2014: 58-63
2012
[c9]
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José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana:
NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform. ICBO 2012
2011
[c8]
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María Del Carmen Legaz-García, José Antonio Miñarro-Giménez, Marisa Madrid, Santiago Torres Martínez, Jesualdo Tomás Fernández-Breis:
Using ontologies for supporting genomic sequence annotation projects. BCB 2011: 617-625
[c7]
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José Antonio Miñarro-Giménez, Jesualdo Tomás Fernández-Breis:
Ontology-Driven Method for Integrating Biomedical Repositories. CAEPIA 2011: 473-482
[c6]
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José Antonio Miñarro-Giménez, Teddy G. Miranda-Mena, Rodrigo Martínez-Béjar, Jesualdo Tomás Fernández-Breis:
Exploitation of Translational Bioinformatics for Decision-Making on Cancer Treatments. ITBAM 2011: 1-15
2010
[c5]
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José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Francisco García-Sánchez, Jesualdo Tomás Fernández-Breis:
A Semantic Query Interface for the OGO Platform. ITBAM 2010: 128-142
[c4]
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Catalina Martínez-Costa, José Antonio Miñarro-Giménez, Marcos Menárguez Tortosa, Rafael Valencia-García, Jesualdo Tomás Fernández-Breis:
Flexible Semantic Querying of Clinical Archetypes. KES (1) 2010: 597-606
2009
[c3]
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José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis:
Semantic integration and exploitation of orthology information and genetic disorders. SWAT4LS 2009
2008
[c2]
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  - conf/iat/Ruiz-MartinezMGNVSFM08
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Juana María Ruiz-Martínez, José Antonio Miñarro-Giménez, Laura Guillén-Cárceles, Dagoberto Castellanos Nieves, Rafael Valencia-García, Francisco García-Sánchez, Jesualdo Tomás Fernández-Breis, Rodrigo Martínez-Béjar:
Populating Ontologies in the eTourism Domain. Web Intelligence/IAT Workshops 2008: 316-319
[c1]
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José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis:
An Integrated Ontological Knowledge Base About Orthologous Genes and Proteins. SWAT4LS 2008

Informal and Other Publications

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2015
[i1]
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José Antonio Miñarro-Giménez, Oscar Marín-Alonso, Matthias Samwald:
Applying deep learning techniques on medical corpora from the World Wide Web: a prototypical system and evaluation. CoRR abs/1502.03682 (2015)

Coauthor Index

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