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ORCIDLindsay G. Cowell
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2020 – today
- 2022
[c8]John Beverley, Yongqun He, Barry Smith, Shane Babcock, Eric Merrell, Lindsay G. Cowell, Regina Hurley, Sebastian Deusing:
Coordinating Coronavirus Research: The Virus Infectious Disease Ontology. ICBO 2022: 1-14- 2021
- [j14]Shane Babcock
, John Beverley, Lindsay G. Cowell, Barry Smith:
The Infectious Disease Ontology in the age of COVID-19. J. Biomed. Semant. 12(1): 13 (2021) - [j13]Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve:
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nat. Mach. Intell. 3(11): 936-944 (2021) - [i2]Jared Ostmeyer, Scott Christley, Lindsay G. Cowell:
Dynamic Kernel Matching for Non-conforming Data: A Case Study of T-cell Receptor Datasets. CoRR abs/2103.10472 (2021) - 2020
- [j12]Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell:
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. Frontiers Big Data 3: 22 (2020)
2010 – 2019
- 2019
- [j11]Jared Ostmeyer, Lindsay G. Cowell:
Machine learning on sequential data using a recurrent weighted average. Neurocomputing 331: 281-288 (2019) - 2017
- [j10]Jared Ostmeyer, Scott Christley, William Rounds, Inimary T. Toby, Benjamin M. Greenberg, Nancy Monson, Lindsay G. Cowell:
Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis. BMC Bioinform. 18(1): 401:1-401:10 (2017) - [j9]Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy Monson, William Rounds, Florian Rubelt, Walter Scarborough, Richard H. Scheuermann, Lindsay G. Cowell:
VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data. BMC Bioinform. 18(1): 448:1-448:5 (2017) - [j8]Trygve E. Bakken, Lindsay G. Cowell, Brian D. Aevermann, Mark Novotny, Rebecca D. Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison M. McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann:
Cell type discovery and representation in the era of high-content single cell phenotyping. BMC Bioinform. 18(S-17): 7-16 (2017) - [i1]Jared Ostmeyer, Lindsay G. Cowell:
Machine Learning on Sequential Data Using a Recurrent Weighted Average. CoRR abs/1703.01253 (2017) - 2016
- [j7]Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell:
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17(S-13): 333 (2016) - 2015
- [j6]Mikhail K. Levin, Lindsay G. Cowell:
owlcpp: a C++ library for working with OWL ontologies. J. Biomed. Semant. 6: 35 (2015) - 2014
- [c7]Albert Goldfain, Barry Smith, Lindsay G. Cowell:
Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports. ICBO 2014: 74-77 - 2013
- [c6]Claire L. Gordon, Stephanie Pouch, Lindsay G. Cowell, Mary Regina Boland, Heather L. Platt, Albert Goldfain, Chunhua Weng:
Design and Evaluation of a Bacterial Clinical Infectious Diseases Ontology. AMIA 2013 - 2012
- [c5]Albert Goldfain, Lindsay G. Cowell, Barry Smith:
Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository. ICBO 2012 - 2011
- [j5]Terrence F. Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G. Cowell, Judith A. Blake, Christopher J. Mungall, Alexander D. Diehl:
Logical Development of the Cell Ontology. BMC Bioinform. 12: 6 (2011) - [j4]Albert Goldfain, Barry Smith, Lindsay G. Cowell:
Towards an ontological representation of resistance: The case of MRSA. J. Biomed. Informatics 44(1): 35-41 (2011) - [j3]Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall:
Hematopoietic cell types: Prototype for a revised cell ontology. J. Biomed. Informatics 44(1): 75-79 (2011) - [c4]Mikhail K. Levin, Alan Ruttenberg, Anna Maria Masci, Lindsay G. Cowell:
owl_cpp, a C++ Library for Working with OWL Ontologies. ICBO 2011 - [c3]Anna Maria Masci, Mikhail K. Levin, Alan Ruttenberg, Lindsay G. Cowell:
Connecting Ontologies for the Representation of Biological Pathways. ICBO 2011 - [c2]Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell:
Bridging Multiple Ontologies: Representation of the Liver Immune Response. ICBO 2011 - 2010
- [c1]Albert Goldfain, Barry Smith, Lindsay G. Cowell:
Dispositions and the Infectious Disease Ontology. FOIS 2010: 400-413
2000 – 2009
- 2009
- [j2]Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell:
An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinform. 10 (2009) - 2006
- [j1]Joseph M. Volpe, Lindsay G. Cowell, Thomas B. Kepler:
SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinform. 22(4): 438-444 (2006)
Coauthor Index
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