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ORCIDLudwig Geistlinger
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Journal Articles
- 2023
[j8]Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman:
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinform. 39(3) (2023)- [j7]Kelly B. Eckenrode
, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron:
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j6]Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron:
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22(1): 545-556 (2021) - [j5]Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis:
SIMON: Open-Source Knowledge Discovery Platform. Patterns 2(1): 100178 (2021) - 2020
- [j4]Vinícius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana C. A. Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger:
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. Bioinform. 36(3): 972-973 (2020) - 2016
- [j3]Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer:
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis. BMC Bioinform. 17: 45 (2016) - 2015
- [j2]Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner:
Addressing false discoveries in network inference. Bioinform. 31(17): 2836-2843 (2015) - 2011
- [j1]Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer:
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinform. 27(13): 366-373 (2011)
Informal and Other Publications
- 2018
- [i1]Sean Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron:
Orchestrating a community-developed computational workshop and accompanying training materials. F1000Research 7: 1656 (2018)
Coauthor Index
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