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Journal Articles
- 2024
[j19]Filippo Piccinini
, Marcella Tazzari, Maria Maddalena Tumedei, Mariachiara Stellato, Daniel Remondini, Enrico Giampieri, Giovanni Martinelli, Gastone C. Castellani, Antonella Carbonaro:
Data Science for Health Image Alignment: A User-Friendly Open-Source ImageJ/Fiji Plugin for Aligning Multimodality/Immunohistochemistry/Immunofluorescence 2D Microscopy Images. Sensors 24(2): 451 (2024)- 2022
- [j18]Lorenzo Squadrani, Nico Curti, Enrico Giampieri, Daniel Remondini, Brian S. Blais, Gastone C. Castellani:
Effectiveness of Biologically Inspired Neural Network Models in Learning and Patterns Memorization. Entropy 24(5): 682 (2022) - 2021
- [j17]Ettore Mosca, Matteo Bersanelli, Tommaso Matteuzzi, Noemi Di Nanni, Gastone C. Castellani, Luciano Milanesi, Daniel Remondini:
Characterization and comparison of gene-centered human interactomes. Briefings Bioinform. 22(6) (2021) - [j16]Daniele Dall'Olio, Nico Curti, Eugenio Fonzi, Claudia Sala, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri:
Impact of concurrency on the performance of a whole exome sequencing pipeline. BMC Bioinform. 22(1): 60 (2021) - [j15]Daniele Dall'Olio, Nico Curti, Eugenio Fonzi, Claudia Sala, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri:
Correction to: Impact of concurrency on the performance of a whole exome sequencing pipeline. BMC Bioinform. 22(1): 292 (2021) - 2020
- [j14]Carlo Mengucci, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri:
WISDoM: Characterizing Neurological Time Series With the Wishart Distribution. Frontiers Neuroinformatics 14: 611762 (2020) - [j13]Nico Curti, Daniele Dall'Olio, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri:
rFBP: Replicated Focusing Belief Propagation algorithm. J. Open Source Softw. 5(54): 2663 (2020) - 2018
- [j12]A. Merlotti, Ìtalo Faria do Valle, Gastone C. Castellani, Daniel Remondini:
Statistical modelling of CG interdistance across multiple organisms. BMC Bioinform. 19-S(10): 299-306 (2018) - 2016
- [j11]Gastone C. Castellani, Giulia Menichetti, Paolo Garagnani, Maria Giulia Bacalini, Chiara Pirazzini, Claudio Franceschi, Sebastiano Collino, Claudia Sala, Daniel Remondini, Enrico Giampieri, Ettore Mosca, Matteo Bersanelli, Silvia Vitali, Ìtalo Faria do Valle, Pietro Liò, Luciano Milanesi:
Systems medicine of inflammaging. Briefings Bioinform. 17(3): 527-540 (2016) - [j10]Ìtalo Faria do Valle, Enrico Giampieri, Giorgia Simonetti, Antonella Padella, Marco Manfrini, Anna Ferrari, Cristina Papayannidis, Isabella Zironi, Marianna Garonzi, Simona Bernardi, Massimo Delledonne, Giovanni Martinelli, Daniel Remondini, Gastone C. Castellani:
Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. BMC Bioinform. 17(S-12): 27-35 (2016) - [j9]Matteo Bersanelli, Ettore Mosca, Daniel Remondini, Enrico Giampieri, Claudia Sala, Gastone C. Castellani, Luciano Milanesi:
Methods for the integration of multi-omics data: mathematical aspects. BMC Bioinform. 17(S-2): 15 (2016) - [j8]Claudia Sala, Silvia Vitali, Enrico Giampieri, Ìtalo Faria do Valle, Daniel Remondini, Paolo Garagnani, Matteo Bersanelli, Ettore Mosca, Luciano Milanesi, Gastone C. Castellani:
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data. BMC Bioinform. 17(S-2): 16 (2016) - 2009
- [j7]Luciano Milanesi, Paolo Romano, Gastone C. Castellani, Daniel Remondini, Pietro Liò:
Trends in modeling Biomedical Complex Systems. BMC Bioinform. 10(S-12): 0 (2009) - 2008
- [j6]Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M. Sedivy, Leon N. Cooper, Ettore Verondini, Luciano Milanesi, Gastone C. Castellani:
Reconstructing networks of pathways via significance analysis of their intersections. BMC Bioinform. 9(S-4) (2008) - 2007
- [j5]Nicola Neretti, Daniel Remondini, Marc Tatar, John M. Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastone C. Castellani:
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. BMC Bioinform. 8(S-1) (2007) - [j4]Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani:
Networks from Gene Expression Time Series: Characterization of Correlation Patterns. Int. J. Bifurc. Chaos 17(7): 2477-2483 (2007) - 2005
- [j3]Paolo Tieri, Silvana Valensin, Vito Latora, Gastone C. Castellani, Massimo Marchiori, Daniel Remondini, Claudio Franceschi:
Quantifying the relevance of different mediators in the human immune cell network. Bioinform. 21(8): 1639-1643 (2005) - 2003
- [j2]Armando Bazzani, Daniel Remondini, Nathan Intrator, Gastone C. Castellani:
The Effect of Noise on a Class of Energy-Based Learning Rules. Neural Comput. 15(7): 1621-1640 (2003) - 2002
- [j1]Daniel Remondini, Nathan Intrator, Gastone C. Castellani, F. Bersani, Leon N. Cooper:
Optimal spontaneous activity in neural network modeling. Neurocomputing 44-46: 591-595 (2002)
Conference and Workshop Papers
- 2020
- [c2]Laura Caramazza, Annalisa De Angelis, Daniel Remondini, Gastone C. Castellani, Micaela Liberti, Francesca Apollonio, Isabella Zironi:
Galvanotactic Phenomenon Induced by Non-Contact Electrostatic Field: Investigation in a Scratch Assay. EMBC 2020: 2520-2523 - 2005
- [c1]Daniel Remondini, Paolo Tieri, Silvana Valensin, Ettore Verondini, Claudio Franceschi, F. Bersani, Gastone C. Castellani:
A General Learning Rule for Network Modeling of Neuroimmune Interactome. WIRN/NAIS 2005: 286-292
Informal and Other Publications
- 2020
- [i3]Francesco Durazzi, Martin Müller, Marcel Salathé, Daniel Remondini:
International expert communities on Twitter become more isolated during the COVID-19 pandemic. CoRR abs/2011.06845 (2020) - 2013
- [i2]Giulia Menichetti, Daniel Remondini, Pietro Panzarasa, Raul J. Mondragón, Ginestra Bianconi:
Weighted Multiplex Networks. CoRR abs/1312.6720 (2013) - 2011
- [i1]Scott D. Pauls, Daniel Remondini:
A measure of centrality based on the spectrum of the Laplacian. CoRR abs/1112.4758 (2011)
Coauthor Index
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