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ORCIDJohan Trygg
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2020 – today
- 2024
[c10]Nabeel Khalid, Maria Caroprese, Gillian Lovell, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
CellSpot: Deep Learning-Based Efficient Cell Center Detection in Microscopic Images. ICANN (8) 2024: 215-229- [c9]Nabeel Khalid
, Maria Caroprese, Gillian Lovell, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
Bounding Box Is All You Need: Learning to Segment Cells in 2D Microscopic Images via Box Annotations. MIUA (1) 2024: 314-328 - [c8]Nabeel Khalid, Mohammadmahdi Koochali, Duway Nicolas Lesmes Leon, Maria Caroprese, Gillian Lovell, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
CellGenie: An End-to-End Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images. MIUA (1) 2024: 387-401 - 2023
- [c7]Nabeel Khalid, Tiago Comassetto Fróes, Maria Caroprese, Gillian Lovell, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis. ICANN (2) 2023: 545-557 - [c6]Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
Deep Learning Architectures for the Prediction of YY1-Mediated Chromatin Loops. ISBRA 2023: 72-84 - 2022
- [j11]Dong Wang, Therese Enlund, Johan Trygg, Mats Tysklind, Lili Jiang:
Toward Delicate Anomaly Detection of Energy Consumption for Buildings: Enhance the Performance From Two Levels. IEEE Access 10: 31649-31659 (2022) - [c5]Nabeel Khalid, Mohammadmahdi Koochali, Vikas Rajashekar, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed:
DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation. BHI 2022: 1-4 - [c4]Nabeel Khalid, Fabian Schmeisser, Mohammadmahdi Koochali, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed:
Point2Mask: A Weakly Supervised Approach for Cell Segmentation Using Point Annotation. MIUA 2022: 139-153 - 2021
- [j10]Muhammad Nabeel Asim, Muhammad Imran Malik, Christoph Zehe, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
A Robust and Precise ConvNet for Small Non-Coding RNA Classification (RPC-snRC). IEEE Access 9: 19379-19390 (2021) - [j9]Beatriz Galindo-Prieto, Paul Geladi, Johan Trygg:
Multiblock variable influence on orthogonal projections (MB-VIOP) for enhanced interpretation of total, global, local and unique variations in OnPLS models. BMC Bioinform. 22(1): 176 (2021) - [c3]Nabeel Khalid, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed:
DeepCIS: An end-to-end Pipeline for Cell-type aware Instance Segmentation in Microscopic Images. BHI 2021: 1-4 - [c2]Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Christoph Zehe, Olivier Cloarec, Rickard Sjögren, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
L2S-MirLoc: A Lightweight Two Stage MiRNA Sub-Cellular Localization Prediction Framework. IJCNN 2021: 1-8 - [c1]Nabeel Khalid, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed:
DeepCeNS: An end-to-end Pipeline for Cell and Nucleus Segmentation in Microscopic Images. IJCNN 2021: 1-8 - [i1]Rickard Sjögren, Johan Trygg:
Out-of-Distribution Example Detection in Deep Neural Networks using Distance to Modelled Embedding. CoRR abs/2108.10673 (2021)
2010 – 2019
- 2019
- [j8]Daniel Svensson, Rickard Sjögren, David Sundell, Andreas Sjödin, Johan Trygg:
doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows. BMC Bioinform. 20(1): 498:1-498:13 (2019) - 2012
- [j7]Tommy Löfstedt, Olof Ahnlund, Michael Peolsson, Johan Trygg:
Dynamic ultrasound imaging - A multivariate approach for the analysis and comparison of time-dependent musculoskeletal movements. BMC Medical Imaging 12: 29 (2012) - 2010
- [j6]Michael Peolsson, Tommy Löfstedt, Susanna Vogt, Hans Stenlund, Anton Arndt, Johan Trygg:
Modelling human musculoskeletal functional movements using ultrasound imaging. BMC Medical Imaging 10: 9 (2010)
2000 – 2009
- 2008
- [j5]Max Bylesjö, Mattias Rantalainen, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg:
K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space. BMC Bioinform. 9 (2008) - [j4]Mattias Rantalainen, Olivier Cloarec, Timothy M. D. Ebbels, Torbjörn Lundstedt, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg:
Piecewise multivariate modelling of sequential metabolic profiling data. BMC Bioinform. 9 (2008) - 2007
- [j3]Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Stefan Jansson, Thomas Moritz, Johan Trygg:
Orthogonal projections to latent structures as a strategy for microarray data normalization. BMC Bioinform. 8 (2007) - 2006
- [j2]Max Bylesjö, Andreas Sjödin, Daniel Eriksson, Henrik Antti, Thomas Moritz, Stefan Jansson, Johan Trygg:
MASQOT-GUI: spot quality assessment for the two-channel microarray platform. Bioinform. 22(20): 2554-2555 (2006) - 2005
- [j1]Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Michael Sjöström, Stefan Jansson, Henrik Antti, Johan Trygg:
MASQOT: a method for cDNA microarray spot quality control. BMC Bioinform. 6: 250 (2005)
Coauthor Index
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