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Journal Articles
- 2014
[j13]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan
, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides:
IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. 42(Database-Issue): 560-567 (2014)- [j12]Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides:
IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42(Database-Issue): 568-573 (2014) - 2012
- [j11]Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer:
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinform. 13: 141 (2012) - [j10]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40(Database-Issue): 115-122 (2012) - [j9]Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. 40(Database-Issue): 123-129 (2012) - 2010
- [j8]Sean D. Hooper, Daniel Dalevi, Amrita Pati, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinform. 26(3): 295-301 (2010) - [j7]Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides:
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 38(Database-Issue): 346-354 (2010) - [j6]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 38(Database-Issue): 382-390 (2010) - 2009
- [j5]Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides:
IMG ER: a system for microbial genome annotation expert review and curation. Bioinform. 25(17): 2271-2278 (2009) - 2008
- [j4]Konstantinos Liolios, Konstantinos Mavrommatis, Nektarios Tavernarakis, Nikos Kyrpides:
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 36(Database-Issue): 475-479 (2008) - [j3]Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36(Database-Issue): 528-533 (2008) - [j2]Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides:
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36(Database-Issue): 534-538 (2008) - 2006
- [j1]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system. Nucleic Acids Res. 34(Database-Issue): 344-348 (2006)
Conference and Workshop Papers
- 2023
- [c6]Pantelis Papageorgiou, Aigli Korfiati, Aristotelis Misios, Aristidis G. Vrahatis, Alexandros A. Pittis, Bogdan Tanasa, Konstantinos Mavrommatis, Yilin Zhao, Tao Yang, Vassilis Pitsikalis:
pCCI: A machine learning patient-centric cell-cell interactions framework for cancer subtype classification. BIBM 2023: 910-913 - 2022
- [c5]Konstantinos Mavrommatis:
Optimization techniques for the energy efficiency of wireless networks. PCI 2022: 158-163 - [c4]Konstantinos Mavrommatis:
Confronting and intrusion detection techniques of cyber-attacks in wired and wireless communication networks. PCI 2022: 290-295 - 2013
- [c3]Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis:
Accelerating gene context analysis using bitmaps. SSDBM 2013: 26:1-26:12 - 2008
- [c2]Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz:
Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13 - 2006
- [c1]Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides:
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367
Coauthor Index
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