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Journal Articles
- 2019
[j8]Deepak Bandyopadhyay
, Constantine Kreatsoulas, Pat G. Brady, Joseph Boyer, Zangdong He, Genaro Scavello, Tyler Peryea, Ajit Jadhav, Dac-Trung Nguyen, Rajarshi Guha:
Scaffold-Based Analytics: Enabling Hit-to-Lead Decisions by Visualizing Chemical Series Linked across Large Datasets. J. Chem. Inf. Model. 59(11): 4880-4892 (2019)- 2010
- [j7]Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha:
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. IEEE Trans. Inf. Technol. Biomed. 14(5): 1137-1143 (2010) - 2009
- [j6]Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha:
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. J. Comput. Aided Mol. Des. 23(11): 773-784 (2009) - [j5]Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha:
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. J. Comput. Aided Mol. Des. 23(11): 785-797 (2009) - 2008
- [j4]Deepak Bandyopadhyay, Dimitris K. Agrafiotis:
A self-organizing algorithm for molecular alignment and pharmacophore development. J. Comput. Chem. 29(6): 965-982 (2008) - 2007
- [j3]Deepak Bandyopadhyay, Jack Snoeyink:
Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL. Comput. Geom. 38(1-2): 4-15 (2007) - [j2]Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Michael Farnum:
Radial Clustergrams: Visualizing the Aggregate Properties of Hierarchical Clusters. J. Chem. Inf. Model. 47(1): 69-75 (2007) - 2005
- [j1]Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha:
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. J. Comput. Biol. 12(6): 657-671 (2005)
Conference and Workshop Papers
- 2008
- [c5]Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha:
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. BIBM 2008: 199-206 - 2004
- [c4]Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha:
Mining protein family specific residue packing patterns from protein structure graphs. RECOMB 2004: 308-315 - [c3]Deepak Bandyopadhyay, Jack Snoeyink:
Almost-Delaunay simplices: nearest neighbor relations for imprecise points. SODA 2004: 410-419 - 2001
- [c2]Deepak Bandyopadhyay, Ramesh Raskar, Henry Fuchs:
Dynamic Shader Lamps: Painting on Movable Objects. ISAR 2001: 207-216 - [c1]Ramesh Raskar, Greg Welch, Kok-Lim Low, Deepak Bandyopadhyay:
Shader Lamps: Animating Real Objects With Image-Based Illumination. Rendering Techniques 2001: 89-102
Parts in Books or Collections
- 2013
- [p1]Dimitris K. Agrafiotis, Deepak Bandyopadhyay, Eric Yang:
Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry Problem. Distance Geometry 2013: 291-311
Coauthor Index
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