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ORCIDJames I. Mullins
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Journal Articles
- 2019
[j8]Thomas R. Sibley
, Evan J. Silberman, James I. Mullins:
ISDB: a database toolkit for storing and analyzing viral integration site data. Bioinform. 35(6): 1073-1075 (2019)- 2015
- [j7]Paul Thatcher Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphael Gottardo, Michal Juraska, Connor McCoy, Brendan B. Larsen, Eric Sanders-Buell, Chris Carrico, Sergey Menis, Meera Bose, Miguel A. Arroyo, Robert J. O'Connell, Sorachai Nitayaphan, Punnee Pitisuttithum, Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert:
: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j6]Joshua T. Herbeck, John E. Mittler, Geoffrey S. Gottlieb, James I. Mullins:
An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load. PLoS Comput. Biol. 10(6) (2014) - 2013
- [j5]Wenjie Deng, Brandon Maust, Dylan H. Westfall, Lennie Chen, Hong Zhao, Brendan B. Larsen, Shyamala Iyer, Yi Liu, James I. Mullins:
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data. Bioinform. 29(19): 2402-2409 (2013) - 2008
- [j4]David C. Nickle, Nebojsa Jojic, David Heckerman, Vladimir Jojic, Darko Kirovski, Morgane Rolland, Sergei L. Kosakovsky Pond, James I. Mullins:
Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al. PLoS Comput. Biol. 4(1) (2008) - [j3]Jonathan M. Carlson, Zabrina L. Brumme, Christine M. Rousseau, Chanson J. Brumme, Philippa Matthews, Carl Myers Kadie, James I. Mullins, Bruce D. Walker, P. Richard Harrigan, Philip J. R. Goulder, David Heckerman:
Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag. PLoS Comput. Biol. 4(11) (2008) - 2007
- [j2]Wenjie Deng, David C. Nickle, Gerald H. Learn, Brandon Maust, James I. Mullins:
ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinform. 23(17): 2334-2336 (2007) - [j1]David C. Nickle, Morgane Rolland, Mark A. Jensen, Sergei L. Kosakovsky Pond, Wenjie Deng, Mark Seligman, David Heckerman, James I. Mullins, Nebojsa Jojic:
Coping with Viral Diversity in HIV Vaccine Design. PLoS Comput. Biol. 3(4) (2007)
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