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Journal Articles
- 2021
[j24]Ian Sillitoe
, Nicola Bordin, Natalie L. Dawson, Vaishali P. Waman, Paul Ashford, Harry M. Scholes, Camilla S. M. Pang, Laurel Woodridge, Clemens Rauer, Neeladri Sen, Mahnaz Abbasian, Sean Le Cornu, Su Datt Lam, Karel Berka, Ivana Hutarová Vareková, Radka Svobodová Vareková, Jonathan G. Lees, Christine A. Orengo:
CATH: increased structural coverage of functional space. Nucleic Acids Res. 49(Database-Issue): D266-D273 (2021)- [j23]Su Datt Lam, M. Madan Babu, Jonathan G. Lees, Christine A. Orengo:
Biological impact of mutually exclusive exon switching. PLoS Comput. Biol. 17(3) (2021) - 2019
- [j22]Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees:
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly. Bioinform. 35(10): 1766-1767 (2019) - [j21]Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo:
CATH: expanding the horizons of structure-based functional annotations for genome sequences. Nucleic Acids Res. 47(Database-Issue): D280-D284 (2019) - 2018
- [j20]Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees:
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46(Database-Issue): D1282 (2018) - [j19]Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees:
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46(Database-Issue): D435-D439 (2018) - 2017
- [j18]Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe:
CATH: an expanded resource to predict protein function through structure and sequence. Nucleic Acids Res. 45(Database-Issue): D289-D295 (2017) - [j17]Cen Wan, Jonathan G. Lees, Federico Minneci, Christine A. Orengo, David T. Jones:
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster. PLoS Comput. Biol. 13(10) (2017) - 2016
- [j16]Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo:
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 32(18): 2889 (2016) - [j15]Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees:
Gene3D: expanding the utility of domain assignments. Nucleic Acids Res. 44(Database-Issue): 404-409 (2016) - 2015
- [j14]Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo:
FUN-L: gene prioritization for RNAi screens. Bioinform. 31(12): 2052-2053 (2015) - [j13]Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo:
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 31(21): 3460-3467 (2015) - [j12]Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo:
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43(Database-Issue): 376-381 (2015) - [j11]Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo:
CATH FunFHMMer web server: protein functional annotations using functional family assignments. Nucleic Acids Res. 43(Webserver-Issue): W148-W153 (2015) - 2014
- [j10]Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo:
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis. Nucleic Acids Res. 42(Database-Issue): 240-245 (2014) - 2013
- [j9]Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo:
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 41(Database-Issue): 490-498 (2013) - 2012
- [j8]Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo:
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. Nucleic Acids Res. 40(Database-Issue): 465-471 (2012) - 2011
- [j7]Corin Yeats, Jonathan G. Lees, Phil Carter, Ian Sillitoe, Christine A. Orengo:
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences. Nucleic Acids Res. 39(Web-Server-Issue): 546-550 (2011) - 2010
- [j6]Jonathan G. Lees, Corin Yeats, Oliver Redfern, Andrew B. Clegg, Christine A. Orengo:
Gene3D: merging structure and function for a Thousand genomes. Nucleic Acids Res. 38(Database-Issue): 296-300 (2010) - [j5]Juan A. G. Ranea, Ian Morilla, Jonathan G. Lees, Adam James Reid, Corin Yeats, Andrew B. Clegg, Francisca Sánchez-Jiménez, Christine A. Orengo:
Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling. PLoS Comput. Biol. 6(9) (2010) - 2008
- [j4]Jonathan G. Lees, Robert W. Janes:
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations. BMC Bioinform. 9 (2008) - [j3]Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo:
Gene3D: comprehensive structural and functional annotation of genomes. Nucleic Acids Res. 36(Database-Issue): 414-418 (2008) - 2006
- [j2]Jonathan G. Lees, Andrew J. Miles, Frank Wien, B. A. Wallace:
A reference database for circular dichroism spectroscopy covering fold and secondary structure space. Bioinform. 22(16): 1955-1962 (2006) - [j1]Jonathan G. Lees, Andrew J. Miles, Robert W. Janes, B. A. Wallace:
Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data. BMC Bioinform. 7: 507 (2006)
Reference Works
- 2019
- [r1]Natalie L. Dawson, Sayoni Das, Jonathan G. Lees, Christine A. Orengo:
Protein Structure Classification. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 472-487
Coauthor Index
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