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Journal Articles
- 2023
[j1]Ruining Deng
, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo:
Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation. IEEE Trans. Biomed. Eng. 70(9): 2636-2644 (2023)
Conference and Workshop Papers
- 2023
- [c17]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images. MILLanD@MICCAI 2023: 82-92 - [c16]Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yaohong Wang, Yihan Wang, Yucheng Tang, Haichun Yang, Yuankai Huo:
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-Empowered Learning. MICCAI (6) 2023: 497-507 - [c15]Can Cui, Shunxing Bao, Jia Li, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Sophie Chiron, Ken S. Lau, Yaohong Wang, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo:
Influence of cell-type ratio on spatially resolved single-cell transcriptomes using the Tangram algorithm: based on implementation on single-cell and MxIF data. Digital and Computational Pathology 2023 - [c14]Haoju Leng, Ruining Deng, Zuhayr Asad, R. Michael Womick, Haichun Yang, Lipeng Wan, Yuankai Huo:
An accelerated pipeline for multi-label renal pathology image segmentation at the whole slide image level. Digital and Computational Pathology 2023 - [c13]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Deep constrained spherical deconvolution for robust harmonization. Image Processing 2023 - 2022
- [c12]Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo:
MAG: A Simple Learning-Based Patient-Level Aggregation Method for Detecting Microsatellite Instability from Whole-Slide Images. ISBI 2022: 1-4 - [c11]Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data. Computer-Aided Diagnosis 2022 - [c10]Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo:
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning. REMIA@MICCAI 2022: 75-84 - [c9]Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
CircleSnake: Instance Segmentation with Circle Representation. MLMI@MICCAI 2022: 298-306 - [c8]Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo:
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data. MICCAI (5) 2022: 626-635 - [c7]Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo:
Single Dynamic Network for Multi-label Renal Pathology Image Segmentation. MIDL 2022: 304-314 - [c6]Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo:
Dense multi-object 3D glomerular reconstruction and quantification on 2D serial section whole slide images. Digital and Computational Pathology 2022 - [c5]Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo:
Eosinophilic esophagitis multi-label feature recognition on whole slide imaging using transfer learning. Digital and Computational Pathology 2022 - [c4]Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo:
Self-supervised learning with large-scale web image mining for characterizing glomerular lesions. Digital and Computational Pathology 2022 - [c3]Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Integrate memory efficiency methods for self-supervised learning on pathological image analysis. Image Processing 2022 - [c2]Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo:
Evaluating transformer-based semantic segmentation networks for pathological image segmentation. Image Processing 2022 - [c1]Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo:
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool. MIUA 2022: 778-786
Informal and Other Publications
- 2023
- [i15]Haoju Leng, Ruining Deng, Zuhayr Asad, R. Michael Womick, Haichun Yang, Lipeng Wan, Yuankai Huo:
An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level. CoRR abs/2305.14566 (2023) - [i14]Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yucheng Tang, Haichun Yang, Yuankai Huo:
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning. CoRR abs/2306.00047 (2023) - [i13]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Andrea T. Shafer, Susan M. Resnick, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Robust Fiber ODF Estimation Using Deep Constrained Spherical Deconvolution for Diffusion MRI. CoRR abs/2306.02900 (2023) - [i12]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images. CoRR abs/2307.00750 (2023) - [i11]Quan Liu, Hanyu Zheng, Brandon T. Swartz, Ho Hin Lee, Zuhayr Asad, Ivan I. Kravchenko, Jason G. Valentine, Yuankai Huo:
Digital Modeling on Large Kernel Metamaterial Neural Network. CoRR abs/2307.11862 (2023) - 2022
- [i10]Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo:
MAg: a simple learning-based patient-level aggregation method for detecting microsatellite instability from whole-slide images. CoRR abs/2201.04769 (2022) - [i9]Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo:
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification. CoRR abs/2202.00087 (2022) - [i8]Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo:
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data. CoRR abs/2203.04419 (2022) - [i7]Can Cui, Haichun Yang, Yaohong Wang, Shilin Zhao, Zuhayr Asad, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Deep Multi-modal Fusion of Image and Non-image Data in Disease Diagnosis and Prognosis: A Review. CoRR abs/2203.15588 (2022) - [i6]Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo:
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining. CoRR abs/2206.00123 (2022) - [i5]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo:
Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation. CoRR abs/2206.13632 (2022) - [i4]Tianyuan Yao, Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Zuhayr Asad, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Haichun Yang, Catie Chang, Yuankai Huo:
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning. CoRR abs/2208.14357 (2022) - [i3]Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
CircleSnake: Instance Segmentation with Circle Representation. CoRR abs/2211.01254 (2022) - 2021
- [i2]Cam Nguyen, Zuhayr Asad, Yuankai Huo:
Evaluating Transformer based Semantic Segmentation Networks for Pathological Image Segmentation. CoRR abs/2108.11993 (2021) - [i1]Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo:
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data. CoRR abs/2112.12665 (2021)
Coauthor Index
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