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ORCIDSebastian Kmiecik
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Journal Articles
- 2024
[j17]Aleksandra E. Badaczewska-Dawid
, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik:
Structure prediction of linear and cyclic peptides using CABS-flex. Briefings Bioinform. 25(2) (2024)- 2022
- [j16]Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik:
A3D database: structure-based predictions of protein aggregation for the human proteome. Bioinform. 38(11): 3121-3123 (2022) - [j15]Aleksandra E. Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik:
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes. Nucleic Acids Res. 50(W1): 474-482 (2022) - 2021
- [j14]Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski:
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. Briefings Bioinform. 22(3) (2021) - 2019
- [j13]Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik:
Protein-peptide docking using CABS-dock and contact information. Briefings Bioinform. 20(6): 2299-2305 (2019) - [j12]Mateusz Kurcinski, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Aleksander Kuriata, Andrzej Kolinski, Sebastian Kmiecik:
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility. Bioinform. 35(4): 694-695 (2019) - [j11]Aleksander Kuriata, Valentin Iglesias, Mateusz Kurcinski, Salvador Ventura, Sebastian Kmiecik:
Aggrescan3D standalone package for structure-based prediction of protein aggregation properties. Bioinform. 35(19): 3834-3835 (2019) - [j10]Mateusz Kurcinski, Maciej Pawel Ciemny, Tymoteusz Oleniecki, Aleksander Kuriata, Aleksandra E. Badaczewska-Dawid, Andrzej Kolinski, Sebastian Kmiecik:
CABS-dock standalone: a toolbox for flexible protein-peptide docking. Bioinform. 35(20): 4170-4172 (2019) - [j9]Aleksander Kuriata, Valentin Iglesias, Jordi Pujols, Mateusz Kurcinski, Sebastian Kmiecik, Salvador Ventura:
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility. Nucleic Acids Res. 47(Webserver-Issue): W300-W307 (2019) - 2018
- [j8]Aleksander Kuriata, Aleksandra Maria Gierut, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik:
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures. Nucleic Acids Res. 46(Webserver-Issue): W338-W343 (2018) - 2016
- [j7]Wojciech Pulawski, Michal Jamróz, Michal Kolinski, Andrzej Kolinski, Sebastian Kmiecik:
Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model. J. Chem. Inf. Model. 56(11): 2207-2215 (2016) - 2015
- [j6]Rafael Zambrano, Michal Jamróz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik, Salvador Ventura:
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures. Nucleic Acids Res. 43(Webserver-Issue): W306-W313 (2015) - [j5]Mateusz Kurcinski, Michal Jamróz, Maciej Blaszczyk, Andrzej Kolinski, Sebastian Kmiecik:
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site. Nucleic Acids Res. 43(Webserver-Issue): W419-W424 (2015) - 2014
- [j4]Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik:
CABS-flex predictions of protein flexibility compared with NMR ensembles. Bioinform. 30(15): 2150-2154 (2014) - 2013
- [j3]Maciej Blaszczyk, Michal Jamróz, Sebastian Kmiecik, Andrzej Kolinski:
CABS-fold: server for the de novo and consensus-based prediction of protein structure. Nucleic Acids Res. 41(Webserver-Issue): 406-411 (2013) - [j2]Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik:
CABS-flex: server for fast simulation of protein structure fluctuations. Nucleic Acids Res. 41(Webserver-Issue): 427-431 (2013) - 2007
- [j1]Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski:
Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates. J. Comput. Chem. 28(9): 1593-1597 (2007)
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