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Journal Articles
- 2025
[j10]Ziming Gan, Doudou Zhou, Everett Neil Rush, Vidul Ayakulangara Panickan, Yuk-Lam Ho, George Ostrouchov, Zhiwei Xu, Shuting Shen, Xin Xiong, Kimberly F. Greco, Chuan Hong, Clara-Lea Bonzel, Jun Wen, Lauren Costa, Tianrun Cai, Edmon Begoli, Zongqi Xia, J. Michael Gaziano, Katherine P. Liao, Kelly Cho, Tianxi Cai, Junwei Lu:
ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis. J. Biomed. Informatics 162: 104761 (2025)- 2024
- [j9]Jianhui Gao, Clara-Lea Bonzel, Chuan Hong, Paul Varghese, Karim Zakir, Jessica L. Gronsbell:
Semi-supervised ROC analysis for reliable and streamlined evaluation of phenotyping algorithms. J. Am. Medical Informatics Assoc. 31(3): 640-650 (2024) - [j8]Isabelle-Emmanuella Nogues, Jun Wen
, Yihan Zhao, Clara-Lea Bonzel, Victor M. Castro, Yucong Lin, Shike Xu, Jue Hou, Tianxi Cai:
Semi-supervised Double Deep Learning Temporal Risk Prediction (SeDDLeR) with Electronic Health Records. J. Biomed. Informatics 157: 104685 (2024) - [j7]Mengyan Li, Xiaoou Li, Kevin Pan, Alon Geva, Doris Yang, Sara Morini Sweet, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Xin Xiong, Kenneth D. Mandl, Tianxi Cai:
Multisource representation learning for pediatric knowledge extraction from electronic health records. npj Digit. Medicine 7(1) (2024) - [j6]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. Patterns 5(1): 100906 (2024) - 2023
- [j5]Amelia L. M. Tan, Emily J. Getzen, Meghan R. Hutch, Zachary H. Strasser, Alba Gutiérrez-Sacristán, Trang T. Le, Arianna Dagliati, Michele Morris, David A. Hanauer, Bertrand Moal, Clara-Lea Bonzel, William Yuan, Lorenzo Chiudinelli, Priyam Das, Harrison G. Zhang, Bruce J. Aronow, Paul Avillach, Gabriel A. Brat, Tianxi Cai, Chuan Hong, William G. La Cava, He Hooi Will Loh, Yuan Luo, Shawn N. Murphy, Kee Yuan Hgiam, Gilbert S. Omenn, Lav P. Patel, Malarkodi J. Samayamuthu, Emily R. Shriver, Zahra Shakeri Hossein Abad, Byorn W. L. Tan, Shyam Visweswaran, Xuan Wang, Griffin M. Weber, Zongqi Xia, Bertrand Verdy, Qi Long, Danielle L. Mowery, John H. Holmes:
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? J. Biomed. Informatics 139: 104306 (2023) - 2022
- [j4]Doudou Zhou, Ziming Gan, Xu Shi, Alina Patwari, Everett Neil Rush, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Chuan Hong, Yuk-Lam Ho, Tianrun Cai, Lauren Costa, Xiaoou Li, Victor M. Castro, Shawn N. Murphy, Gabriel A. Brat, Griffin M. Weber, Paul Avillach, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Junwei Lu, Tianxi Cai:
Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. J. Biomed. Informatics 133: 104147 (2022) - [j3]Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai:
SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics 134: 104176 (2022) - [j2]Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber:
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022) - 2021
- [j1]Leonid L. Chepelev, Xuan Wang, Benjamin Gold, Clara-Lea Bonzel, Frank Rybicki Jr, Jennifer W. Uyeda, Adnan Sheikh, Dan Anderson, Jared Lindaman, Greg Mogel, Dimitrios Mitsouras, Mary C. Mahoney, Tianxi Cai, Frank J. Rybicki:
Improved Appropriateness of Advanced Diagnostic Imaging After Implementation of Clinical Decision Support Mechanism. J. Digit. Imaging 34(2): 397-403 (2021)
Conference and Workshop Papers
- 2023
- [c2]Antoine Neuraz, Ivan Lerner, Olivier Birot, Camila Arias, Larry Han, Clara-Lea Bonzel, Tianxi Cai, Kim Tâm Huynh, Adrien Coulet:
TAXN: Translate Align Extract Normalize, a Multilingual Extraction Tool for Clinical Texts. MedInfo 2023: 649-653 - 2022
- [c1]Molei Liu, Sara Morini, Xin Xiong, Chuan Hong, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Everett Neil Rush, Yuk-Lam Ho, Kelly Cho, J. Michael Gaziano, Katherine P. Liao, Tianxi Cai, Tianrun Cai:
Knowledge-Driven Online Multimodal Automated Phenotyping System. AMIA 2022
Informal and Other Publications
- 2025
- [i2]Doudou Zhou, Han Tong, Linshanshan Wang, Suqi Liu, Xin Xiong, Ziming Gan, Romain Griffier, Boris P. Hejblum, Yun-Chung Liu, Chuan Hong, Clara-Lea Bonzel, Tianrun Cai, Kevin Pan, Yuk-Lam Ho, Lauren Costa, Vidul Ayakulangara Panickan, J. Michael Gaziano, Kenneth D. Mandl, Vianney Jouhet, Rodolphe Thiébaut, Zongqi Xia, Kelly Cho, Katherine P. Liao, Tianxi Cai:
Representation Learning to Advance Multi-institutional Studies with Electronic Health Record Data. CoRR abs/2502.08547 (2025) - 2023
- [i1]Jun Wen, Jue Hou, Clara-Lea Bonzel, Yihan Zhao, Victor M. Castro, Vivian S. Gainer, Dana Weisenfeld, Tianrun Cai, Yuk-Lam Ho, Vidul Ayakulangara Panickan, Lauren Costa, Chuan Hong, J. Michael Gaziano, Katherine P. Liao, Junwei Lu, Kelly Cho, Tianxi Cai:
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records. CoRR abs/2305.11407 (2023)
Coauthor Index
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