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Paul Zaharias

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Journal Articles

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2023
[j5]
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  - journals/tcbb/ZahariasSW23
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  - https://dblp.org/rec/journals/tcbb/ZahariasSW23
Paul Zaharias, Vladimir Smirnov, Tandy J. Warnow:
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1700-1712 (2023)
2022
[j4]
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  - journals/bioinformatics/ShenZW22
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Chengze Shen, Paul Zaharias, Tandy J. Warnow:
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences. Bioinform. 38(4): 918-924 (2022)
[j3]
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  - journals/jcb/ZahariasGW22
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Paul Zaharias, Martin Grosshauser, Tandy J. Warnow:
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling. J. Comput. Biol. 29(1): 74-89 (2022)
2021
[j2]
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  - journals/algorithms/ParkZW21
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Minhyuk Park, Paul Zaharias, Tandy J. Warnow:
Disjoint Tree Mergers for Large-Scale Maximum Likelihood Tree Estimation. Algorithms 14(5): 148 (2021)
[j1]
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  - journals/bioinformatics/GuptaZW21
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Maya Gupta, Paul Zaharias, Tandy J. Warnow:
Accurate large-scale phylogeny-aware alignment using BAli-Phy. Bioinform. 37(24): 4677-4683 (2021)

Conference and Workshop Papers

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2021
[c1]
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Paul Zaharias, Vladimir Smirnov, Tandy J. Warnow:
The Maximum Weight Trace Alignment Merging Problem. AlCoB 2021: 159-171

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