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Journal Articles
- 2023
[j2]Gongchen Zhang
, Chenyu Zhu, Xiaohan Chen, Jifang Yan, Dongyu Xue, Zixuan Wei, Guohui Chuai, Qi Liu:
Systematic Exploration of Optimized Base Editing gRNA Design and Pleiotropic Effects with BExplorer. Genom. Proteom. Bioinform. 21(6): 1237-1245 (2023)- 2021
- [j1]Shaoqi Chen, Dongyu Xue, Guohui Chuai, Qiang Yang, Qi Liu:
FL-QSAR: a federated learning-based QSAR prototype for collaborative drug discovery. Bioinform. 36(22-23): 5492-5498 (2021)
Conference and Workshop Papers
- 2024
- [c2]Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, Shujian Huang, Quanquan Gu:
Diffusion Language Models Are Versatile Protein Learners. ICML 2024 - 2023
- [c1]Zaixiang Zheng, Yifan Deng, Dongyu Xue, Yi Zhou, Fei Ye, Quanquan Gu:
Structure-informed Language Models Are Protein Designers. ICML 2023: 42317-42338
Informal and Other Publications
- 2024
- [i5]Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, Shujian Huang, Quanquan Gu:
Diffusion Language Models Are Versatile Protein Learners. CoRR abs/2402.18567 (2024) - [i4]Xiangxin Zhou, Dongyu Xue, Ruizhe Chen, Zaixiang Zheng, Liang Wang, Quanquan Gu:
Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization. CoRR abs/2403.16576 (2024) - [i3]Fei Ye, Zaixiang Zheng, Dongyu Xue, Yuning Shen, Lihao Wang, Yiming Ma, Yan Wang, Xinyou Wang, Xiangxin Zhou, Quanquan Gu:
ProteinBench: A Holistic Evaluation of Protein Foundation Models. CoRR abs/2409.06744 (2024) - [i2]Xinyou Wang, Zaixiang Zheng, Fei Ye, Dongyu Xue, Shujian Huang, Quanquan Gu:
DPLM-2: A Multimodal Diffusion Protein Language Model. CoRR abs/2410.13782 (2024) - 2023
- [i1]Zaixiang Zheng, Yifan Deng, Dongyu Xue, Yi Zhou, Fei Ye, Quanquan Gu:
Structure-informed Language Models Are Protein Designers. CoRR abs/2302.01649 (2023)
Coauthor Index
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