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ORCIDDmitry A. Afonnikov
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2010 – 2019
- 2017
[j8]Zakhar S. Mustafin, Sergey A. Lashin
, Yury G. Matushkin, Konstantin V. Gunbin, Dmitry A. Afonnikov:
Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles. BMC Bioinform. 18(S-1): 28:1-28:9 (2017)- [j7]Kirill E. Medvedev, Nikolay A. Kolchanov, Dmitry A. Afonnikov:
Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions. J. Bioinform. Comput. Biol. 15(2): 1650036:1-1650036:18 (2017) - 2012
- [j6]Konstantin V. Gunbin, Valentin V. Suslov, Mikhail A. Genaev, Dmitry A. Afonnikov:
Computer System for Analysis of Molecular Evolution Modes (SAMEM): Analysis of molecular evolution modes at deep inner branches of the phylogenetic tree. Silico Biol. 11(3-4): 109-123 (2012) - [j5]Yuriy L. Orlov, Han Xu, Dmitry A. Afonnikov, Bing Lim, Jian-Chien Heng, Ping Yuan, Ming Chen, Junli Yan, Neil D. Clarke, Nina Orlova, Mikael Huss, Konstantin V. Gunbin, Nikolay Podkolodnyy, Huck-Hui Ng:
Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell. J. Integr. Bioinform. 9(2) (2012)
2000 – 2009
- 2007
- [j4]Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov:
The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study. Silico Biol. 7(3): 333-354 (2007) - [c2]Yuri Vyatkin, Konstantin V. Gunbin, Alexey V. Snytnikov, Dmitry A. Afonnikov:
The Location of the Gene Regions Under Selective Pressure: Plato Algorithm Parallelization. PaCT 2007: 184-187 - 2004
- [j3]Dmitry A. Afonnikov, Nikolay A. Kolchanov:
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Nucleic Acids Res. 32(Web-Server-Issue): 64-68 (2004) - 2002
- [j2]Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov:
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Res. 30(1): 200-202 (2002) - 2001
- [j1]Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov:
Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. Bioinform. 17(11): 1035-1046 (2001)
1990 – 1999
- 1997
- [c1]Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov:
Detecting direct correlations between positions in multiple alignments of amino acid sequences. German Conference on Bioinformatics 1997: 87-98
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