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Books and Theses
- 2008
[b1]Philippe Hupé:
Biostatistical Algorithms for OMICS Data in oncology. Application to DNA copy number microarray Experiments. Agro ParisTech, France, 2008
Journal Articles
- 2014
- [j8]Valentina Boeva
, Tatiana G. Popova, Maxime Lienard, Sebastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes:
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. Bioinform. 30(24): 3443-3450 (2014) - 2011
- [j7]Camille Sabbah, Gildas Mazo, Caroline Paccard, Fabien Reyal, Philippe Hupé:
SMETHILLIUM: spatial normalization METHod for ILLumina InfinIUM HumanMethylation BeadChip. Bioinform. 27(12): 1693-1695 (2011) - 2008
- [j6]Guillem Rigaill, Philippe Hupé, Anna Almeida, Philippe La Rosa, Jean-Philippe Meyniel, Charles Decraene, Emmanuel Barillot:
ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays. Bioinform. 24(6): 768-774 (2008) - 2006
- [j5]Céline Rouveirol, Nicolas Stransky, Philippe Hupé, Philippe La Rosa, Eric Viara, Emmanuel Barillot, François Radvanyi:
Computation of recurrent minimal genomic alterations from array-CGH data. Bioinform. 22(7): 849-856 (2006) - [j4]Philippe La Rosa, Eric Viara, Philippe Hupé, Gaëlle Pierron, Stéphane Liva, Pierre Neuvial, Isabel Brito, Séverine Lair, Nicolas Servant, Nicolas Robine, Elodie Manié, Caroline Brennetot, Isabelle Janoueix-Lerosey, Virginie Raynal, Nadège Gruel, Céline Rouveirol, Nicolas Stransky, Marc-Henri Stern, Olivier Delattre, Alain Aurias, François Radvanyi, Emmanuel Barillot:
VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles. Bioinform. 22(17): 2066-2073 (2006) - [j3]Pierre Neuvial, Philippe Hupé, Isabel Brito, Stéphane Liva, Elodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot:
Spatial normalization of array-CGH data. BMC Bioinform. 7: 264 (2006) - [j2]Stéphane Liva, Philippe Hupé, Pierre Neuvial, Isabel Brito, Eric Viara, Philippe La Rosa, Emmanuel Barillot:
CAPweb: a bioinformatics CGH array Analysis Platform. Nucleic Acids Res. 34(Web-Server-Issue): 477-481 (2006) - 2004
- [j1]Philippe Hupé, Nicolas Stransky, Jean-Paul Thiery, François Radvanyi, Emmanuel Barillot:
Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinform. 20(18): 3413-3422 (2004)
Informal and Other Publications
- 2020
- [i2]Frédéric Jarlier, Nicolas Joly, Nicolas Fedy, Thomas Magalhaes, Leonor Sirotti, Paul Paganiban, Firmin Martin, Michael McManus, Philippe Hupé:
QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing. F1000Research 9: 240 (2020) - [i1]Choumouss Kamoun, Julien Roméjon, Henri de Soyres, Apolline Gallois, Elodie Girard, Philippe Hupé:
biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab. F1000Research 9: 632 (2020)
Coauthor Index
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