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2020 – today
- 2022
[j12]Sameer Shanbhag, Riddhi Patil, Noor Zahara, Chirag Shetty, Rachel Weidenhammer, Sneha Watharkar, Pranav Tambvekar, Philip P. Badzuh, Chester Dias, Narendra Vankayala, Prutha Kulkarni, Charan Vallapureddy, Shamika Kulkarni, Pooja Nikhare, Nowlan H. Freese
, Ann E. Loraine:
Integrated Genome Browser App Store. Bioinform. 38(8): 2348-2349 (2022)- [j11]Karthik Raveendran, Nowlan H. Freese, Chaitanya Kintali, Srishti Tiwari, Pawan Bole, Chester Dias, Ann E. Loraine:
BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser. Frontiers Bioinform. 2 (2022)
2010 – 2019
- 2016
- [j10]Nowlan H. Freese, David C. Norris, Ann E. Loraine:
Integrated genome browser: visual analytics platform for genomics. Bioinform. 32(14): 2089-2095 (2016) - [j9]Tarun Mall, John Eckstein, David C. Norris, Hiral Vora, Nowlan H. Freese, Ann E. Loraine:
ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins. Bioinform. 32(16): 2499-2501 (2016) - 2014
- [j8]Ruolin Liu, Ann E. Loraine, Julie A. Dickerson:
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinform. 15: 364 (2014)
2000 – 2009
- 2009
- [j7]John W. Nicol, Gregg A. Helt, Steven G. Blanchard Jr., Archana Raja, Ann E. Loraine:
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinform. 25(20): 2730-2731 (2009) - [j6]Gregg A. Helt, John W. Nicol, Ed Erwin, Eric Blossom, Steven G. Blanchard Jr., Stephen A. Chervitz, Cyrus L. Harmon, Ann E. Loraine:
Genoviz Software Development Kit: Java tool kit for building genomics visualization applications. BMC Bioinform. 10: 266 (2009) - 2008
- [j5]Ann E. Loraine:
Bioinformatics, Genomics, and Proteomics: Getting the Big Picture (Biotechnology in the 21st Century): Ann Finney Batiza. Briefings Bioinform. 9(1): 94-95 (2008) - [j4]Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung Sam Hung, Ann E. Loraine, Stanley J. Roux:
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient. BMC Bioinform. 9 (2008) - 2005
- [c7]Ann E. Loraine, Mari L. Salmi, Stephen C. Stout, Stanley J. Roux:
Gene-Ontology-based analysis of gene expression changes in early development of Ceratopteris spores. CSB Workshops 2005: 95-96 - 2004
- [c6]Boris Budagyan, Ann E. Loraine:
Gene Length and Alternative Transcription in Fruit Fly. CSB 2004: 515-516 - [c5]Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine:
The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome. Pacific Symposium on Biocomputing 2004: 17-28 - 2003
- [j3]Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose:
Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro. J. Bioinform. Comput. Biol. 1(2): 289-306 (2003) - [j2]Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose:
NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res. 31(1): 82-86 (2003) - 2002
- [j1]Ann E. Loraine, Gregg A. Helt:
Visualizing the genome: techniques for presenting human genome data and annotations. BMC Bioinform. 3: 19 (2002) - [c4]Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose:
Protein-Based Analysis of Alternative Splicing in the Human Genome. CSB 2002: 118- - [c3]Ann E. Loraine, Gregg A. Helt:
Visualization Techniques for Genomic Data. CSB 2002: 321- - [c2]Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose:
Structure-Based Comparison of Four Eukaryotic Genomes. Pacific Symposium on Biocomputing 2002: 127-138 - [c1]Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose:
NetAffx: affymetrix probeset annotations. SAC 2002: 147-150
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