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ORCIDYuying Xie 0001
Person information
- affiliation: Michigan State University, Computational Mathematics, Science and Engineering Department, East Lansing, MI, USA
- affiliation (PhD 2015): University of North Carolina at Chapel Hill, Statistics and Operation Research Department, NC, USA
Other persons with the same name
- Yuying Xie — disambiguation page
- Yuying Xie 0002
![[0000-0002-4804-2176]](https://dblp.uni-trier.de./img/orcid-mark.12x12.png "0000-0002-4804-2176")
— Aalborg University, Department of Electronic Systems, Danmark
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Journal Articles
- 2024
[j4]Jiayuan Ding, Lingxiao Li, Qiaolin Lu, Julian Venegas, Yixin Wang, Lidan Wu, Wei Jin, Hongzhi Wen, Renming Liu, Wenzhuo Tang, Xinnan Dai, Zhaoheng Li, Wangyang Zuo, Yi Chang, Yu Leo Lei, Lulu Shang, Patrick Danaher, Yuying Xie, Jiliang Tang:
SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology. J. Comput. Biol. 31(9): 871-885 (2024)- [j3]Andriana Manousidaki, Anna Little, Yuying Xie:
Clustering and visualization of single-cell RNA-seq data using path metrics. PLoS Comput. Biol. 20(5): 1012014 (2024) - [j2]Dylan Molho, Jiayuan Ding, Wenzhuo Tang, Zhaoheng Li, Hongzhi Wen, Yixin Wang, Julian Venegas, Wei Jin, Renming Liu, Runze Su, Patrick Danaher, Robert Yang, Yu Leo Lei, Yuying Xie, Jiliang Tang:
Deep Learning in Single-cell Analysis. ACM Trans. Intell. Syst. Technol. 15(3): 40:1-40:62 (2024) - 2019
- [j1]Yuning Hao, Ming Yan, Blake R. Heath, Yu L. Lei, Yuying Xie:
Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. PLoS Comput. Biol. 15(5) (2019)
Conference and Workshop Papers
- 2024
- [c4]Hongzhi Wen, Wenzhuo Tang, Xinnan Dai, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang:
CellPLM: Pre-training of Cell Language Model Beyond Single Cells. ICLR 2024 - 2023
- [c3]Wenzhuo Tang, Hongzhi Wen, Renming Liu, Jiayuan Ding, Wei Jin, Yuying Xie, Hui Liu, Jiliang Tang:
Single-Cell Multimodal Prediction via Transformers. CIKM 2023: 2422-2431 - 2022
- [c2]Hongzhi Wen, Jiayuan Ding, Wei Jin, Yiqi Wang, Yuying Xie, Jiliang Tang:
Graph Neural Networks for Multimodal Single-Cell Data Integration. KDD 2022: 4153-4163 - 2019
- [c1]He Lyu, Ningyu Sha, Shuyang Qin, Ming Yan, Yuying Xie, Rongrong Wang:
Manifold denoising by Nonlinear Robust Principal Component Analysis. NeurIPS 2019: 13390-13400
Informal and Other Publications
- 2024
- [i6]Wenzhuo Tang, Haitao Mao, Danial Dervovic, Ivan Brugere, Saumitra Mishra, Yuying Xie, Jiliang Tang:
Cross-Domain Graph Data Scaling: A Showcase with Diffusion Models. CoRR abs/2406.01899 (2024) - 2023
- [i5]Hongzhi Wen, Wenzhuo Tang, Wei Jin, Jiayuan Ding, Renming Liu, Feng Shi, Yuying Xie, Jiliang Tang:
Single Cells Are Spatial Tokens: Transformers for Spatial Transcriptomic Data Imputation. CoRR abs/2302.03038 (2023) - [i4]Wenzhuo Tang, Hongzhi Wen, Renming Liu, Jiayuan Ding, Wei Jin, Yuying Xie, Hui Liu, Jiliang Tang:
Single-Cell Multimodal Prediction via Transformers. CoRR abs/2303.00233 (2023) - 2022
- [i3]Hongzhi Wen, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang:
Graph Neural Networks for Multimodal Single-Cell Data Integration. CoRR abs/2203.01884 (2022) - [i2]Dylan Molho, Jiayuan Ding, Zhaoheng Li, Hongzhi Wen, Wenzhuo Tang, Yixin Wang, Julian Venegas, Wei Jin, Renming Liu, Runze Su, Patrick Danaher, Robert Yang, Yu Leo Lei, Yuying Xie, Jiliang Tang:
Deep Learning in Single-Cell Analysis. CoRR abs/2210.12385 (2022) - 2019
- [i1]He Lyu, Ningyu Sha, Shuyang Qin, Ming Yan, Yuying Xie, Rongrong Wang:
Manifold Denoising by Nonlinear Robust Principal Component Analysis. CoRR abs/1911.03831 (2019)
Coauthor Index
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