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2020 – today
- 2023
[j14]José Luis Ruiz
, Susanne Reimering, Juan David Escobar-Prieto, Nicolas M. B. Brancucci, Diego F. Echeverry, Abdirahman I Abdi, Matthias Marti, Elena Gómez-Díaz, Thomas D. Otto:
From contigs towards chromosomes: automatic improvement of long read assemblies (ILRA). Briefings Bioinform. 24(4) (2023)- [j13]William Haese-Hill, Kathryn Crouch, Thomas D. Otto:
peaks2utr: a robust Python tool for the annotation of 3′ UTRs. Bioinform. 39(3) (2023) - 2022
- [j12]Gavin Mackenzie, Rasmus W. Jensen, Thomas Lavstsen, Thomas D. Otto:
Varia: a tool for prediction, analysis and visualisation of variable genes. BMC Bioinform. 23(1): 52 (2022) - [j11]Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D. Otto:
Using topic modeling to detect cellular crosstalk in scRNA-seq. PLoS Comput. Biol. 18(4) (2022)
2010 – 2019
- 2016
- [j10]Sascha Steinbiss, Fatima Silva-Franco, Brian P. Brunk, Bernardo Foth, Christiane Hertz-Fowler, Matthew Berriman, Thomas D. Otto:
Companion: a web server for annotation and analysis of parasite genomes. Nucleic Acids Res. 44(Webserver-Issue): W29-W34 (2016) - 2015
- [j9]Martin Hunt, Astrid Gall, Swee Hoe Ong, Jacqui Brener, Bridget Ferns, Philip J. R. Goulder, Eleni Nastouli, Jacqueline A. Keane, Paul Kellam, Thomas D. Otto:
IVA: accurate de novo assembly of RNA virus genomes. Bioinform. 31(14): 2374-2376 (2015) - 2013
- [j8]Tim Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan:
BamView: visualizing and interpretation of next-generation sequencing read alignments. Briefings Bioinform. 14(2): 203-212 (2013) - 2012
- [c2]Sérgio Lifschitz, Carlos Juliano M. Viana, Cristian Tristão, Marcos Catanho, Wim M. Degrave, Antonio Basílio de Miranda, Márcia Bezerra, Thomas D. Otto:
Design and Implementation of ProteinWorldDB. BSB 2012: 144-155 - 2010
- [j7]Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman:
BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinform. 26(5): 676-677 (2010) - [j6]Thomas D. Otto, Marcos Catanho, Cristian Tristão, Márcia Bezerra, Renan Mathias Fernandes, Guilherme Steinberger Elias, Alexandre Capeletto Scaglia, Bill Bovermann, Viktors Berstis, Sérgio Lifschitz, Antonio Basílio de Miranda, Wim M. Degrave:
ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes. Bioinform. 26(5): 705-707 (2010) - [j5]Thomas D. Otto, Mandy Sanders, Matthew Berriman, Chris Newbold:
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinform. 26(14): 1704-1707 (2010)
2000 – 2009
- 2009
- [j4]Samuel A. Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman:
ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinform. 25(15): 1968-1969 (2009) - 2008
- [j3]Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alves-Ferreira, Antonio Basílio de Miranda, Wim M. Degrave:
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS). BMC Bioinform. 9 (2008) - [j2]Thomas D. Otto, Ana Carolina R. Guimarães, Wim M. Degrave, Antonio Basílio de Miranda:
AnEnPi: identification and annotation of analogous enzymes. BMC Bioinform. 9 (2008) - 2007
- [j1]Thomas D. Otto, Andreas M. Thurnherr:
Efficient algorithms for finding sills in digital topographic maps. Comput. Geosci. 33(5): 678-684 (2007) - 2003
- [c1]Anke Meyer-Bäse, Thomas D. Otto, Thomas Martinetz, Dorothee Auer, Axel Wismüller:
Model-Free Functional MRI Analysis Using Topographic Independent Component Analysis. ESANN 2003: 509-514
Coauthor Index
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