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ORCIDOlga V. Kalinina
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- affiliation: Max Planck Institute for Informatics, Saarbücken, Germany
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Journal Articles
- 2023
[j17]Sanjay Kumar Srikakulam
, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V. Kalinina:
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants. Bioinform. 39(3) (2023)- [j16]Roman Joeres, Daniel Bojar, Olga V. Kalinina:
GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES. J. Cheminformatics 15(1): 37 (2023) - 2022
- [j15]Carla F. Sousa, Mohamed A. M. Kamal, Robert Richter, Kalanika Elamaldeniya, Rolf W. Hartmann, Martin Empting, Claus-Michael Lehr, Olga V. Kalinina:
Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane. J. Chem. Inf. Model. 62(20): 5023-5033 (2022) - [j14]Galya V. Klink, Olga V. Kalinina, Georgii A. Bazykin:
Phylogenetic inference of changes in amino acid propensities with single-position resolution. PLoS Comput. Biol. 18(2) (2022) - 2021
- [j13]Zakaria Louadi, Kevin Yuan, Alexander Greß, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List:
DIGGER: exploring the functional role of alternative splicing in protein interactions. Nucleic Acids Res. 49(Database-Issue): D309-D318 (2021) - [j12]Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine:
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS Comput. Biol. 17(4) (2021) - 2020
- [j11]Alexander Greß, Olga V. Kalinina:
SphereCon - a method for precise estimation of residue relative solvent accessible area from limited structural information. Bioinform. 36(11): 3372-3378 (2020) - 2016
- [j10]Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller:
BALL-SNPgp - from genetic variants toward computational diagnostics. Bioinform. 32(12): 1888-1890 (2016) - [j9]Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina:
Patterns of amino acid conservation in human and animal immunodeficiency viruses. Bioinform. 32(17): 685-692 (2016) - [j8]Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina:
StructMAn: annotation of single-nucleotide polymorphisms in the structural context. Nucleic Acids Res. 44(Webserver-Issue): W463-W468 (2016) - 2014
- [j7]Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer:
Entropy gain due to water release upon ligand binding. J. Cheminformatics 6(S-1): 35 (2014) - 2012
- [j6]Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell:
ProtChemSI: a network of protein-chemical structural interactions. Nucleic Acids Res. 40(Database-Issue): 549-553 (2012) - 2011
- [j5]Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell:
Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs. PLoS Comput. Biol. 7(5) (2011) - 2010
- [j4]Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina:
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol. Biol. 5: 29 (2010) - 2009
- [j3]Olga V. Kalinina, Mikhail S. Gelfand, Robert B. Russell:
Combining specificity determining and conserved residues improves functional site prediction. BMC Bioinform. 10 (2009) - 2004
- [j2]Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova:
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32(Web-Server-Issue): 424-428 (2004) - 2003
- [j1]Olga V. Kalinina, Vsevolod J. Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova:
The channel in transporters is formed by residues that are rare in transmembrane helices. Silico Biol. 3(1-2): 197-204 (2003)
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