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2020 – today
- 2023
[j22]Siying Lin
, Haoyang Zhang, Mengling Qi, David N. Cooper, Yuedong Yang, Yuanhao Yang, Huiying Zhao:
Inferring the genetic relationship between brain imaging-derived phenotypes and risk of complex diseases by Mendelian randomization and genome-wide colocalization. NeuroImage 279: 120325 (2023)- 2021
- [j21]Robin Steinhaus, Sebastian Proft, Markus Schuelke, David N. Cooper, Jana Marie Schwarz, Dominik Seelow:
MutationTaster2021. Nucleic Acids Res. 49(Webserver-Issue): 446-451 (2021)
2010 – 2019
- 2019
- [j20]Jana Marie Schwarz, Daniela Hombach, Sebastian Köhler, David N. Cooper, Markus Schuelke, Dominik Seelow:
RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants. Nucleic Acids Res. 47(Webserver-Issue): W106-W113 (2019) - [j19]Peng Zhang, Bertrand Boisson, Peter D. Stenson, David N. Cooper, Jean-Laurent Casanova, Laurent Abel, Yuval Itan:
SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data. Nucleic Acids Res. 47(Webserver-Issue): W623-W631 (2019) - [j18]Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PLoS Comput. Biol. 15(6) (2019) - 2018
- [j17]Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper:
Mutational signatures and mutable motifs in cancer genomes. Briefings Bioinform. 19(6): 1085-1101 (2018) - [j16]Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell:
FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. Bioinform. 34(3): 511-513 (2018) - 2017
- [j15]Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinform. 33(14): i389-i398 (2017) - [j14]Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell:
An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome. BMC Bioinform. 18(1): 442:1-442:8 (2017) - 2016
- [j13]Sérgio Matos, David Campos, Renato P. Pinho, Raquel M. Silva, Matthew E. Mort, David N. Cooper, José Luís Oliveira:
Mining clinical attributes of genomic variants through assisted literature curation in Egas. Database J. Biol. Databases Curation 2016 (2016) - [j12]Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j11]Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell:
An integrative approach to predicting the functional effects of non-coding and coding sequence variation. Bioinform. 31(10): 1536-1543 (2015) - [j10]Lukas Folkman, Yuedong Yang, Zhixiu Li, Bela Stantic, Abdul Sattar, Matthew E. Mort, David N. Cooper, Yunlong Liu, Yaoqi Zhou:
DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels. Bioinform. 31(10): 1599-1606 (2015) - [c1]Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper:
Sequential data selection for predicting the pathogenic effects of sequence variation. BIBM 2015: 639-644 - 2014
- [j9]Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin:
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j8]Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin:
CRAVAT: cancer-related analysis of variants toolkit. Bioinform. 29(5): 647-648 (2013) - [j7]Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt:
Predicting the functional consequences of cancer-associated amino acid substitutions. Bioinform. 29(12): 1504-1510 (2013) - 2012
- [j6]Mingxiang Teng, Shoji Ichikawa, Leah R. Padgett, Yadong Wang, Matthew E. Mort, David N. Cooper, Daniel L. Koller, Tatiana Foroud, Howard J. Edenberg, Michael J. Econs, Yunlong Liu:
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions. Bioinform. 28(14): 1879-1886 (2012) - 2010
- [j5]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. Bioinform. 26(16): 1975-1982 (2010) - [j4]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. BMC Bioinform. 11(S-10): O4 (2010)
2000 – 2009
- 2009
- [j3]Biao Li, Vidhya G. Krishnan, Matthew E. Mort, Fuxiao Xin, Kishore K. Kamati, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinform. 25(21): 2744-2750 (2009) - 2006
- [j2]Imtiaz A. Khan, Matthew E. Mort, Paul R. Buckland, Michael C. O'Donovan, David N. Cooper, Nadia A. Chuzhanova:
In Silico Discrimination of Single Nucleotide Polymorphisms and Pathological Mutations in Human Gene Promoter Regions by Means of Local DNA Sequence Context and Regularity. Silico Biol. 6(1-2): 23-34 (2006)
1990 – 1999
- 1998
- [j1]David N. Cooper, Edward V. Ball, Michael Krawczak:
The human gene mutation database. Nucleic Acids Res. 26(1): 285-287 (1998)
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