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2020 – today
- 2024
[j3]Jaden Myers, Keyhan Najafian
, Farhad Maleki, Katie L. Ovens:
Efficient Wheat Head Segmentation with Minimal Annotation: A Generative Approach. J. Imaging 10(7): 152 (2024)- [i3]Farhad Maleki, Linda Moy, Reza Forghani, Tapotosh Ghosh, Katie L. Ovens, Steve Langer, Pouria Rouzrokh, Bardia Khosravi, Ali Ganjizadeh, Daniel I. Warren, Roxana Daneshjou, Mana Moassefi, Atlas Haddadi Avval, Susan Sotardi, Neil A. Tenenholtz, Felipe Kitamura, Timothy Kline:
RIDGE: Reproducibility, Integrity, Dependability, Generalizability, and Efficiency Assessment of Medical Image Segmentation Models. CoRR abs/2401.08847 (2024) - [i2]Jaden Myers, Keyhan Najafian, Farhad Maleki, Katie L. Ovens:
Modified CycleGAN for the synthesization of samples for wheat head segmentation. CoRR abs/2402.15135 (2024) - 2023
- [c6]Andrew Heschl, Hosein Beheshtifard, Phuong Thao Nguyen, Tapotosh Ghosh, Katie L. Ovens, Farhad Maleki:
Deep Learning-Based Hierarchical Delineation of Kidneys, Tumors, and Cysts in CT Images. KiTS@MICCAI 2023: 97-106 - 2022
- [i1]Farhad Maleki, Katie L. Ovens, Rajiv Gupta, Caroline Reinhold, Alan Spatz, Reza Forghani:
Generalizability of Machine Learning Models: Quantitative Evaluation of Three Methodological Pitfalls. CoRR abs/2202.01337 (2022) - 2021
- [j2]Katie L. Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan:
Juxtapose: a gene-embedding approach for comparing co-expression networks. BMC Bioinform. 22(1): 125 (2021) - [c5]Farhad Maleki, Kevin Cote, Keyhan Najafian, Katie L. Ovens, Yan Miao, Rita Zakarian, Caroline Reinhold, Reza Forghani, Peter Savadjiev, Zu-hua Gao:
A Deep Learning-Based Pipeline for Celiac Disease Diagnosis Using Histopathological Images. CAIP (1) 2021: 206-214 - 2020
- [c4]Katie L. Ovens, B. Frank Eames, Ian McQuillan:
The impact of sample size and tissue type on the reproducibility of gene co-expression networks. BCB 2020: 12:1-12:10
2010 – 2019
- 2019
- [j1]Farhad Maleki, Katie L. Ovens, Daniel J. Hogan, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Measuring consistency among gene set analysis methods: A systematic study. J. Bioinform. Comput. Biol. 17(5): 1940010:1-1940010:18 (2019) - [c3]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Gene Set Databases: A Fountain of Knowledge or a Siren Call? BCB 2019: 269-278 - [c2]Farhad Maleki, Katie L. Ovens, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Method Choice in Gene Set Analysis Has Important Consequences for Analysis Outcome. BIOINFORMATICS 2019: 43-54 - 2018
- [c1]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Anthony J. Kusalik:
Sample Size and Reproducibility of Gene Set Analysis. BIBM 2018: 122-129
Coauthor Index
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