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2010 – 2019
- 2012
[j15]Maria Safi, Ryan H. Lilien:
Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA. J. Chem. Inf. Model. 52(6): 1529-1541 (2012)- 2011
- [j14]Izhar Wallach, Ryan H. Lilien:
Virtual Decoy Sets for Molecular Docking Benchmarks. J. Chem. Inf. Model. 51(2): 196-202 (2011) - [j13]Izhar Wallach, Navdeep Jaitly, Kong T. Nguyen, Matthieu Schapira, Ryan H. Lilien:
Normalizing Molecular Docking Rankings using Virtually Generated Decoys. J. Chem. Inf. Model. 51(8): 1817-1830 (2011) - [j12]Matthew D. Segall, Edmund J. Champness, Chris Leeding, Ryan H. Lilien, Ramgopal R. Mettu
, Brian W. Stevens:
Applying Medicinal Chemistry Transformations and Multiparameter Optimization to Guide the Search for High-Quality Leads and Candidates. J. Chem. Inf. Model. 51(11): 2967-2976 (2011) - 2010
- [j11]Navdeep Jaitly, Marcus A. Brubaker, John L. Rubinstein, Ryan H. Lilien:
A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy. Bioinform. 26(19): 2406-2415 (2010) - [j10]Maria Safi, Ryan H. Lilien:
Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations. J. Comput. Chem. 31(6): 1207-1215 (2010)
2000 – 2009
- 2009
- [j9]Izhar Wallach, Ryan H. Lilien:
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding. Bioinform. 25(5): 615-620 (2009) - [j8]Izhar Wallach, Ryan H. Lilien:
Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation. Bioinform. 25(12) (2009) - [j7]Izhar Wallach, Ryan H. Lilien:
Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore Hypotheses. J. Chem. Inf. Model. 49(9): 2116-2128 (2009) - 2008
- [j6]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. J. Comput. Chem. 29(10): 1527-1542 (2008) - [c9]Clifton Forlines, Ryan H. Lilien:
Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment. AVI 2008: 367-371 - 2006
- [c8]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) 2006: 174-183 - [c7]Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. RECOMB 2006: 530-545 - 2005
- [j5]Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald:
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. J. Comput. Biol. 12(6): 740-761 (2005) - [c6]Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald:
High-throughput inference of protein-protein interfaces from unassigned NMR data. ISMB (Supplement of Bioinformatics) 2005: 292-301 - 2004
- [j4]Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald:
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. J. Comput. Biol. 11(2/3): 277-298 (2004) - [j3]Richard E. Gillilan, Ryan H. Lilien:
Optimization and dynamics of protein-protein complexes using B-splines. J. Comput. Chem. 25(13): 1630-1646 (2004) - [c5]Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald:
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme. RECOMB 2004: 46-57 - 2003
- [j2]Ryan H. Lilien, Hany Farid, Bruce Randall Donald:
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. J. Comput. Biol. 10(6): 925-946 (2003) - [c4]Lincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald:
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. CSB 2003: 611-612 - [c3]Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald:
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB 2003: 176-187 - 2001
- [c2]Bruce Randall Donald, Christopher Bailey-Kellogg, Jack Kelley, Ryan H. Lilien:
Physical Geometric Algorithms for Structural Molecular Biology. ICRA 2001: 940-947
1990 – 1999
- 1999
- [j1]Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson:
View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure. IEEE Trans. Pattern Anal. Mach. Intell. 21(9): 951-955 (1999) - 1996
- [c1]Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson:
Object Recognition Using Subspace Methods. ECCV (1) 1996: 536-545
Coauthor Index
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