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2020 – today
- 2024
[c5]Alma Davidson
, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller:
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. RECOMB-CG 2024: 248-270- 2022
- [j13]Alexander Churkin, Yann Ponty, Danny Barash:
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations. BMC Bioinform. 23-S(8): 424 (2022) - 2020
- [j12]Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash:
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs. Bioinform. 36(9): 2920-2922 (2020) - [c4]Irina Rabaev, Berat Kurar Barakat, Alexander Churkin, Jihad El-Sana:
The HHD Dataset. ICFHR 2020: 228-233
2010 – 2019
- 2018
- [j11]Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash:
Design of RNAs: comparing programs for inverse RNA folding. Briefings Bioinform. 19(2): 350-358 (2018) - [c3]Alexander Churkin, Danny Barash:
A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations. ISBRA 2018: 174-178 - 2017
- [j10]Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash:
A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics. Frontiers Appl. Math. Stat. 3: 20 (2017) - 2012
- [j9]Iddo Aviram, Ilia Veltman, Alexander Churkin, Danny Barash:
Efficient procedures for the numerical simulation of mid-size RNA kinetics. Algorithms Mol. Biol. 7: 24 (2012) - [j8]Alexander Churkin, Idan Gabdank, Danny Barash:
On topological indices for small RNA graphs. Comput. Biol. Chem. 41: 35-40 (2012) - 2011
- [j7]Danny Barash, Alexander Churkin:
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction. Briefings Bioinform. 12(2): 104-114 (2011) - [j6]Assaf Avihoo, Alexander Churkin, Danny Barash:
RNAexinv: An Extended Inverse RNA Folding from Shape and Physical Attributes to Sequences. BMC Bioinform. 12: 319 (2011) - [j5]Alexander Churkin, Idan Gabdank, Danny Barash:
The RNAmute web server for the mutational analysis of RNA secondary structures. Nucleic Acids Res. 39(Web-Server-Issue): 92-99 (2011) - 2010
- [j4]Alexander Churkin, Moriah Cohen, Yonat Shemer-Avni, Danny Barash:
Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV. J. Bioinform. Comput. Biol. 8(6): 1013-1026 (2010)
2000 – 2009
- 2008
- [j3]Alexander Churkin, Danny Barash:
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions. BMC Bioinform. 9 (2008) - 2006
- [j2]Alexander Churkin, Danny Barash:
RNAmute: RNA secondary structure mutation analysis tool. BMC Bioinform. 7: 221 (2006) - [j1]Alexander Churkin, Danny Barash:
Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute. EURASIP J. Adv. Signal Process. 2006 (2006) - 2005
- [c2]Alexander Churkin, Ornit Elgad, Oshrat Petgho, Danny Barash:
RNAMute: RNA Secondary Structure Mutation Analysis Tool. CSB Workshops 2005: 139-141 - [c1]Alexander Churkin, Danny Barash:
Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin. CVPR Workshops 2005: 139
Coauthor Index
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