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2020 – today
- 2024
[j10]Pengcheng Zeng
, Zhixiang Lin:
scICML: Information-Theoretic Co-Clustering-Based Multi-View Learning for the Integrative Analysis of Single-Cell Multi-Omics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 21(1): 200-207 (2024)- 2023
- [j9]Zheng Zhang, Shengquan Chen, Zhixiang Lin:
RefTM: reference-guided topic modeling of single-cell chromatin accessibility data. Briefings Bioinform. 24(1) (2023) - [j8]Pengcheng Zeng, Yuanyuan Ma, Zhixiang Lin:
scAWMV: an adaptively weighted multi-view learning framework for the integrative analysis of parallel scRNA-seq and scATAC-seq data. Bioinform. 39(1) (2023) - [j7]Chen Li, Ting-Fung Chan, Can Yang, Zhixiang Lin:
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics. Bioinform. 39(10) (2023) - 2022
- [j6]Yuanyuan Ma, Zexuan Sun, Pengcheng Zeng, Wenyu Zhang, Zhixiang Lin:
JSNMF enables effective and accurate integrative analysis of single-cell multiomics data. Briefings Bioinform. 23(3) (2022) - [j5]Jingsi Ming, Zhixiang Lin, Jia Zhao, Xiang Wan, Tabula Microcebus Consortium, Can Yang, Angela Ruohao Wu:
FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets. Briefings Bioinform. 23(5) (2022) - [j4]Jia Zhao, Gefei Wang, Jingsi Ming, Zhixiang Lin, Yang Wang, Snigdha Agarwal, Aditi Agrawal, Ahmad Al-Moujahed, Alina Alam, Megan A. Albertelli, Paul Allegakoen, Thomas Ambrosi, Jane Antony, Steven Artandi, Fabienne Aujard, Kyle Awayan, Ankit Baghel, Isaac Bakerman, Trygve E. Bakken, Jalal Baruni, Philip Beachy, Biter Bilen, Olga B. Botvinnik, Scott D. Boyd, Deviana Burhan, Kerriann M. Casey, Charles Chan, Charles A. Chang, Stephen Chang, Ming Chen, Michael F. Clarke, Sheela Crasta, Rebecca Culver, Jessica D'Addabbo, Spyros Darmanis, Roozbeh Dehghannasiri, Song-Lin Ding, Connor V. Duffy, Jacques Epelbaum, F. Hernán Espinoza, Camille Ezran, Jean Farup, James E. Ferrell Jr, Hannah K. Frank, Margaret Fuller, Astrid Gillich, Elias Godoy, Dita Gratzinger, Lisbeth A. Guethlein, Yan Hang, Kazuteru Hasegawa, Rebecca D. Hodge, Malachia Hoover, Franklin W. Huang, Kerwyn Casey Huang, Shelly Huynh, Taichi Isobe, Carly Israel, Sori Jang, Qiuyu Jing, Robert C. Jones, Jengmin Kang, Caitlin J. Karanewsky, Jim Karkanias, Justus Kebschull, Aaron Kershner, Lily Kim, Seung K. Kim, E. Christopher Kirk, Winston Koh, Silvana Konermann, William Kong, Mark A. Krasnow, Christin Kuo, Corinne Lautier, Song Eun Lee, Ed S. Lein, Rebecca Lewis, Peng Li, Shengda Lin, Shixuan Liu, Yin Liu, Gabriel Loeb, Jonathan Z. Long, Wan-Jin Lu, Katherine Lucot, Liqun Luo, Aaron McGeever, Ross Metzger, Jingsi Ming, Thomas J. Montine, Antoine de Morree, Maurizio Morri, Karim Mrouj, Shravani Mukherjee, Ahmad Nabhan, Saba Nafees, Norma Neff, Patrick Neuhöfer, Patricia Nguyen, Jennifer Okamoto, Julia Eve Olivieri, Youcef Ouadah, Honor Paine, Peter Parham, Jozeph L. Pendleton, Lolita Penland, Martine Perret, Angela Oliveira Pisco, Zhen Qi, Stephen R. Quake, Ute Radespiel, Thomas A. Rando, Hajanirina Noëline Ravelonjanahary, Andriamahery Razafindrakoto, Julia Salzman, Nicholas Schaum, Robert Schopler, Bronwyn Scott, Liza Shapiro, Hosu Sin, Rahul Sinha, Rene Sit, Geoff Stanley, Lubert Stryer, Varun Ramanan Subramaniam, Aditi Swarup, Weilun Tan, Alexander Tarashansky, Aris Taychameekiatchai, Jérémy Terrien, Kyle J. Travaglini, Andoni Urtasun, Sivakamasundari, Avin Veerakumar, Venkata Naga Pranathi Vemuri, Jean-Michel Verdier, Iwijn De Vlaminck, Douglas Vollrath, Bo Wang, Bruce Wang, Gefei Wang, Michael F. Z. Wang, Sheng Wang, James Webber, Hannah Weinstein, Irving L. Weissman, Amanda L. Wiggenhorn, Cathy V. Williams, Patricia Wright, Albert Y. Wu, Angela Ruohao Wu, Tony Wyss-Coray, Bao Xiang, Jia Yan, Can Yang, Jinxurong Yang, Anne D. Yoder, Brian Yu, Andrea R. Yung, Yue Zhang, Jia Zhao, Zicheng Zhao:
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets. Nat. Comput. Sci. 2(5): 317-330 (2022) - [i2]Pengcheng Zeng, Zhixiang Lin:
scICML: Information-theoretic Co-clustering-based Multi-view Learning for the Integrative Analysis of Single-cell Multi-omics data. CoRR abs/2205.09523 (2022) - 2021
- [j3]Jiaxuan Wangwu, Zexuan Sun, Zhixiang Lin:
scAMACE: model-based approach to the joint analysis of single-cell data on chromatin accessibility, gene expression and methylation. Bioinform. 37(21): 3874-3880 (2021) - [j2]Pengcheng Zeng, Zhixiang Lin:
coupleCoC+: An information-theoretic co-clustering-based transfer learning framework for the integrative analysis of single-cell genomic data. PLoS Comput. Biol. 17(6) (2021) - 2020
- [i1]Pengcheng Zeng, Zhixiang Lin:
Elastic Coupled Co-clustering for Single-Cell Genomic Data. CoRR abs/2003.12970 (2020)
2010 – 2019
- 2018
- [j1]Zhiqiong Wang, Junchang Xin, Peishun Sun, Zhixiang Lin, Yudong Yao, Xiaosong Gao:
Improved lung nodule diagnosis accuracy using lung CT images with uncertain class. Comput. Methods Programs Biomed. 162: 197-209 (2018) - 2017
- [c1]Zhiqiong Wang, Zhixiang Lin, Lining Xu, Yue Zhao, Junchang Xin:
Batch images compression algorithm based on the common features. CISP-BMEI 2017: 1-6
Coauthor Index
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