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Journal Articles
- 2023
[j3]Thomas Krannich
, Marina Herrera Sarrias, Hiba Ben Aribi, Moustafa Shokrof, Alfredo Iacoangeli, Ammar Al-Chalabi, Fritz J. Sedlazeck, Ben Busby, Ahmad Al Khleifat:
VariantSurvival: a tool to identify genotype-treatment response. Frontiers Bioinform. 3 (2023)- 2019
- [j2]Thomas L. Madden, Ben Busby, Jian Ye:
Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. 35(15): 2699-2700 (2019) - [j1]Grzegorz M. Boratyn, Jean Thierry-Mieg, Danielle Thierry-Mieg, Ben Busby, Thomas L. Madden:
Magic-BLAST, an accurate RNA-seq aligner for long and short reads. BMC Bioinform. 20(1): 405:1-405:19 (2019)
Conference and Workshop Papers
- 2017
- [c2]Liz Amos, Satyajeet Raje, Masato Kimura, Preeti G. Kochar, Victoria Wilder, Ben Busby:
Harmonizing User-defined Phenotypic Variables using Latent Semantic Analysis (LSA) to Improve Data Discoverability in dbGaP. AMIA 2017 - [c1]Satyajeet Raje, Ravi Teja Bhupatiraju, Abdelrahman Hosny, Ben Busby:
MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed. AMIA 2017
Informal and Other Publications
- 2020
- [i11]Matthew N. Bernstein, Ariella L. Gladstein, Khun Zaw Latt, Emily Clough, Ben Busby, Allissa Dillman:
Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive. F1000Research 9: 376 (2020) - 2019
- [i10]Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun A. Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang:
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases. F1000Research 8: 1135 (2019) - 2018
- [i9]Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers:
Matchmaking in Bioinformatics. F1000Research 7: 171 (2018) - [i8]Evan Biederstedt, Jeffrey C. Oliver, Nancy F. Hansen, Aarti Jajoo, Nathan A. Dunn, Andrew Olson, Ben Busby, Alexander T. Dilthey:
NovoGraph: Genome graph construction from multiple long-read de novo assemblies. F1000Research 7: 1391 (2018) - 2017
- [i7]Erin K. Wagner, Satyajeet Raje, Liz Amos, Jessica Kurata, Abhijit Badve, Yingquan Li, Ben Busby:
Extending TCGA queries to automatically identify analogous genomic data from dbGaP. F1000Research 6: 319- (2017) - [i6]Igor Dolgalev, Fritz J. Sedlazeck, Ben Busby:
DangerTrack: A scoring system to detect difficult-to-assess regions. F1000Research 6: 443- (2017) - [i5]Eric M. Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby:
Viewing RNA-seq data on the entire human genome. F1000Research 6: 596- (2017) - [i4]Kishore R. Anekalla, J. P. Courneya, Nicolas Fiorini, Jake Lever, Michael Muchow, Ben Busby:
PubRunner: A light-weight framework for updating text mining results. F1000Research 6: 612- (2017) - 2016
- [i3]Ben Busby, Matthew Lesko, Lisa Federer:
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping. F1000Research 5: 672 (2016) - [i2]Eric Moyer, Megan Hastings Hagenauer, Matthew Lesko, Felix Francis, Oscar Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby:
MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis. F1000Research 5: 674 (2016) - [i1]Elizabeth Baskin, Peter De-Ford, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby:
A cloud-based learning environment for comparing RNA-seq aligners. F1000Research 5: 888 (2016)
Coauthor Index
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