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Journal Articles
- 2021
[j8]Yifan Zuo
, Huan Chen, Jincheng Pan, Yuqi Si, Rob Law, Mu Zhang:
Spatial Distribution Pattern and Influencing Factors of Sports Tourism Resources in China. ISPRS Int. J. Geo Inf. 10(7): 428 (2021)- [j7]Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao:
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28(7): 1393-1400 (2021) - [j6]Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts:
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics 115: 103671 (2021) - [j5]Yuqi Si, Elmer V. Bernstam, Kirk Roberts:
Generalized and transferable patient language representation for phenotyping with limited data. J. Biomed. Informatics 116: 103726 (2021) - 2020
- [j4]Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu:
Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. 27(3): 457-470 (2020) - [j3]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning. J. Biomed. Informatics 108: 103473 (2020) - 2019
- [j2]Yuqi Si, Jingqi Wang, Hua Xu, Kirk E. Roberts:
Enhancing clinical concept extraction with contextual embeddings. J. Am. Medical Informatics Assoc. 26(11): 1297-1304 (2019) - [j1]Yang Xiang, Jun Xu, Yuqi Si, Zhiheng Li, Laila Rasmy, Yujia Zhou, Firat Tiryaki, Fang Li, Yaoyun Zhang, Yonghui Wu, Xiaoqian Jiang, W. Jim Zheng, Degui Zhi, Cui Tao, Hua Xu:
Time-sensitive clinical concept embeddings learned from large electronic health records. BMC Medical Informatics Decis. Mak. 19-S(2): 139-148 (2019)
Conference and Workshop Papers
- 2020
- [c6]Timothy A. Miller, Dmitriy Dligach, Fei Wang, Yuqi Si, Funda Meric-Bernstam:
Learning Patient Representations from Electronic Health Records across Diverse Data Types. AMIA 2020 - [c5]Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts:
Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA 2020 - 2019
- [c4]Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu:
Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA 2019 - 2018
- [c3]Yuqi Si, Kirk E. Roberts:
A Frame-Based NLP System for Cancer-Related Information Extraction. AMIA 2018 - [c2]Kirk Roberts, Yuqi Si, Anshul Gandhi, Elmer V. Bernstam:
A FrameNet for Cancer Information in Clinical Narratives: Schema and Annotation. LREC 2018 - 2017
- [c1]Yuqi Si, Chunhua Weng:
An OMOP CDM-Based Relational Database of Clinical Research Eligibility Criteria. MedInfo 2017: 950-954
Informal and Other Publications
- 2021
- [i6]Yuqi Si, Elmer V. Bernstam, Kirk Roberts:
Generalized and Transferable Patient Language Representation for Phenotyping with Limited Data. CoRR abs/2103.00482 (2021) - [i5]Yuqi Si, Kirk Roberts:
Hierarchical Transformer Networks for Longitudinal Clinical Document Classification. CoRR abs/2104.08444 (2021) - 2020
- [i4]Nicholas Greenspan, Yuqi Si, Kirk Roberts:
Extracting Concepts for Precision Oncology from the Biomedical Literature. CoRR abs/2010.00074 (2020) - [i3]Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts:
Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR abs/2010.02809 (2020) - 2019
- [i2]Yuqi Si, Jingqi Wang, Hua Xu, Kirk Roberts:
Enhancing Clinical Concept Extraction with Contextual Embedding. CoRR abs/1902.08691 (2019) - [i1]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. CoRR abs/1908.04485 (2019)
Coauthor Index
aka: Kirk E. Roberts
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