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ORCIDMarquita Ellis
Person information
- affiliation: IBM Thomas J. Watson Research Center, Yorktown Heights, NY, USA
- affiliation (Ph.D., 2020): University of California, Berkeley, CA, USA
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2020 – today
- 2023
[c11]Tingkai Liu
, Marquita Ellis, Carlos H. A. Costa, Claudia Misale, Sara Kokkila Schumacher, Jinwook Jung, Gi-Joon Nam, Volodymyr V. Kindratenko:
Cloud-Bursting and Autoscaling for Python-Native Scientific Workflows Using Ray. ISC Workshops 2023: 207-220- 2021
- [c10]Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine A. Yelick, Aydin Buluç:
BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper. ACDA 2021: 123-134 - [c9]Marquita Ellis, Aydin Buluç, Katherine A. Yelick:
Scaling Generalized N-Body Problems, A Case Study from Genomics. ICPP 2021: 64:1-64:9 - [c8]Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. IPDPS 2021: 517-526 - [c7]Israt Nisa, Prashant Pandey, Marquita Ellis, Leonid Oliker, Aydin Buluç, Katherine A. Yelick:
Distributed-Memory k-mer Counting on GPUs. IPDPS 2021: 527-536 - [c6]Marquita Ellis, Aydin Buluç, Katherine A. Yelick:
Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics. PPoPP 2021: 465-466 - [c5]Giulia Guidi, Marquita Ellis, Aydin Buluç, Katherine A. Yelick, David E. Culler:
10 Years Later: Cloud Computing is Closing the Performance Gap. ICPE (Companion) 2021: 41-48 - 2020
- [b1]Marquita May Ellis:
Parallelizing Irregular Applications for Distributed Memory Scalability: Case Studies from Genomics. University of California, Berkeley, USA, 2020 - [c4]Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS 2020: 462-471 - [i5]Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker:
The Parallelism Motifs of Genomic Data Analysis. CoRR abs/2001.06989 (2020) - [i4]Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
diBELLA: Distributed Long Read to Long Read Alignment. CoRR abs/2001.10049 (2020) - [i3]Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR abs/2002.05200 (2020) - [i2]Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. CoRR abs/2010.10055 (2020) - [i1]Giulia Guidi, Marquita Ellis, Aydin Buluç, Katherine A. Yelick, David E. Culler:
10 Years Later: Cloud Computing is Closing the Performance Gap. CoRR abs/2011.00656 (2020)
2010 – 2019
- 2019
- [c3]Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
diBELLA: Distributed Long Read to Long Read Alignment. ICPP 2019: 70:1-70:11 - 2017
- [c2]Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par 2017: 79-91 - [c1]Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC 2017: 5:1-5:4
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