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Journal Articles
- 2022
[j10]Quang-Thai Ho
, Nguyen-Quoc-Khanh Le, Yu-Yen Ou:
mCNN-ETC: identifying electron transporters and their functional families by using multiple windows scanning techniques in convolutional neural networks with evolutionary information of protein sequences. Briefings Bioinform. 23(1) (2022)- [j9]Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Van-Nui Nguyen, Jung-Su Chang:
BERT-Promoter: An improved sequence-based predictor of DNA promoter using BERT pre-trained model and SHAP feature selection. Comput. Biol. Chem. 99: 107732 (2022) - [j8]Quang-Hien Kha, Quang-Thai Ho, Nguyen-Quoc-Khanh Le:
Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles. J. Chem. Inf. Model. 62(19): 4820-4826 (2022) - [j7]Trinh-Trung-Duong Nguyen, Quang-Thai Ho, Nguyen-Quoc-Khanh Le, Van-Dinh Phan, Yu-Yen Ou:
Use Chou's 5-Steps Rule With Different Word Embedding Types to Boost Performance of Electron Transport Protein Prediction Model. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1235-1244 (2022) - 2021
- [j6]Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Trinh-Trung-Duong Nguyen, Yu-Yen Ou:
A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information. Briefings Bioinform. 22(5) (2021) - [j5]Quang-Thai Ho, Trinh-Trung-Duong Nguyen, Nguyen-Quoc-Khanh Le, Yu-Yen Ou:
FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers. Comput. Biol. Medicine 131: 104258 (2021) - [j4]Syed Muazzam Ali Shah, Semmy Wellem Taju, Quang-Thai Ho, Trinh-Trung-Duong Nguyen, Yu-Yen Ou:
GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models. Comput. Biol. Medicine 131: 104259 (2021) - 2020
- [j3]Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Edward Kien Yee Yapp, Yu-Yen Ou, Hui-Yuan Yeh:
DeepETC: A deep convolutional neural network architecture for investigating and classifying electron transport chain's complexes. Neurocomputing 375: 71-79 (2020) - 2019
- [j2]Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Yu-Yen Ou:
Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins. J. Bioinform. Comput. Biol. 17(1): 1950005:1-1950005:19 (2019) - 2017
- [j1]Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Yu-Yen Ou:
Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins. J. Comput. Chem. 38(23): 2000-2006 (2017)
Coauthor Index
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