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ORCIDNikolai Nøjgaard
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Journal Articles
- 2022
[j5]Jakob L. Andersen
, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Representing Catalytic Mechanisms with Rule Composition. J. Chem. Inf. Model. 62(22): 5513-5524 (2022)- [j4]Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Peter F. Stadler:
Generic Context-Aware Group Contributions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 429-442 (2022) - 2021
- [j3]Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Graph transformation for enzymatic mechanisms. Bioinform. 37(Supplement): 392-400 (2021) - [j2]Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle:
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry. J. Comput. Biol. 28(7): 701-715 (2021) - 2018
- [j1]Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Time-consistent reconciliation maps and forbidden time travel. Algorithms Mol. Biol. 13(1): 2:1-2:17 (2018)
Conference and Workshop Papers
- 2021
- [c6]Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler:
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. BSB 2021: 53-64 - 2020
- [c5]Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard:
Atom Tracking Using Cayley Graphs. ISBRA 2020: 406-415 - [c4]Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti:
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. SOFSEM (Doctoral Student Research Forum) 2020: 121-132 - 2018
- [c3]Marc Hellmuth, Anders S. Knudsen, Michal Kotrbcík, Daniel Merkle, Nikolai Nøjgaard:
Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face Embeddings. ALENEX 2018: 154-168 - [c2]Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Partial Homology Relations - Satisfiability in Terms of Di-Cographs. COCOON 2018: 403-415 - 2017
- [c1]Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth:
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. WABI 2017: 17:1-17:12
Informal and Other Publications
- 2024
- [i9]Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Automated Inference of Graph Transformation Rules. CoRR abs/2404.02692 (2024) - 2022
- [i8]Jakob L. Andersen, Rolf Fagerberg, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Efficient Modular Graph Transformation Rule Application. CoRR abs/2201.04360 (2022) - [i7]Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Characterizing Catalytic Mechanisms with Overlay Graphs. CoRR abs/2201.04515 (2022) - 2021
- [i6]Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard:
Graph Transformation for Enzymatic Mechanisms. CoRR abs/2102.03292 (2021) - [i5]Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller, Peter F. Stadler:
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. CoRR abs/2107.01893 (2021) - [i4]Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle:
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry. CoRR abs/2108.04077 (2021) - 2019
- [i3]Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti:
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. CoRR abs/1911.00407 (2019) - 2017
- [i2]Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. CoRR abs/1705.02179 (2017) - [i1]Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs. CoRR abs/1711.00504 (2017)
Coauthor Index
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