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2020 – today
- 2024
[j6]Adan Gallardo, Bercem Dutagaci
:
Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability. J. Comput. Aided Mol. Des. 38(1): 1 (2024)- 2023
- [j5]Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D. Kaplan, Michael Feig:
Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning. PLoS Comput. Biol. 19(3) (2023) - 2022
- [j4]Adan Gallardo, Brandon M. Bogart, Bercem Dutagaci:
Protein-Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations. J. Chem. Inf. Model. 62(12): 3079-3089 (2022)
2010 – 2019
- 2019
- [j3]Stephanie A. Brocke, Alexandra Degen, Alexander D. MacKerell Jr., Bercem Dutagaci, Michael Feig:
Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning. J. Chem. Inf. Model. 59(3): 1147-1162 (2019) - 2017
- [j2]Bercem Dutagaci, Maryam Sayadi, Michael Feig:
Heterogeneous dielectric generalized Born model with a van der Waals term provides improved association energetics of membrane-embedded transmembrane helices. J. Comput. Chem. 38(16): 1308-1320 (2017) - [j1]Bercem Dutagaci, Michael Feig:
Determination of Hydrophobic Lengths of Membrane Proteins with the HDGB Implicit Membrane Model. J. Chem. Inf. Model. 57(12): 3032-3042 (2017)
Coauthor Index
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