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ORCIDAlex M. Clark
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2010 – 2019
- 2019
[j16]Alex M. Clark
, Leah McEwen, Peter Gedeck, Barry A. Bunin:
Capturing mixture composition: an open machine-readable format for representing mixed substances. J. Cheminformatics 11(1): 33:1-33:17 (2019)- 2016
- [j15]Alex M. Clark, Krishna Dole, Sean Ekins:
Open Source Bayesian Models. 3. Composite Models for Prediction of Binned Responses. J. Chem. Inf. Model. 56(2): 275-285 (2016) - [j14]Sean Ekins, Alexander L. Perryman, Alex M. Clark, Robert C. Reynolds, Joel S. Freundlich:
Machine Learning Model Analysis and Data Visualization with Small Molecules Tested in a Mouse Model of Mycobacterium tuberculosis Infection (2014-2015). J. Chem. Inf. Model. 56(7): 1332-1343 (2016) - [j13]Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin:
BioAssay templates for the semantic web. PeerJ Comput. Sci. 2: e61 (2016) - [i2]Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin:
BioAssay templates for the semantic web. PeerJ Prepr. 4: e1932 (2016) - 2015
- [j12]Alex M. Clark, Antony J. Williams, Sean Ekins:
Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data. J. Cheminformatics 7: 9 (2015) - [j11]Alex M. Clark, Krishna Dole, Anna Coulon-Spektor, Andrew M. McNutt, George Grass, Joel S. Freundlich, Robert C. Reynolds, Sean Ekins:
Open Source Bayesian Models. 1. Application to ADME/Tox and Drug Discovery Datasets. J. Chem. Inf. Model. 55(6): 1231-1245 (2015) - [j10]Alex M. Clark, Sean Ekins:
Open Source Bayesian Models. 2. Mining a "Big Dataset" To Create and Validate Models with ChEMBL. J. Chem. Inf. Model. 55(6): 1246-1260 (2015) - [i1]Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, Peter B. Madrid:
Machine learning models identify molecules active against the Ebola virus in vitro. F1000Research 4: 1091 (2015) - 2014
- [j9]Sean Ekins, Alex M. Clark, S. Joshua Swamidass, Nadia K. Litterman, Antony J. Williams:
Bigger data, collaborative tools and the future of predictive drug discovery. J. Comput. Aided Mol. Des. 28(10): 997-1008 (2014) - [j8]Alex M. Clark, Malabika Sarker, Sean Ekins:
New target prediction and visualization tools incorporating open source molecular fingerprints for TB Mobile 2.0. J. Cheminformatics 6(1): 38 (2014) - [j7]Sean Ekins, Richard Pottorf, Robert C. Reynolds, Antony J. Williams, Alex M. Clark, Joel S. Freundlich:
Looking Back to the Future: Predicting in Vivo Efficacy of Small Molecules versus Mycobacterium tuberculosis. J. Chem. Inf. Model. 54(4): 1070-1082 (2014) - 2013
- [j6]Sean Ekins, Alex M. Clark, Malabika Sarker:
TB mobile: a mobile app for anti-tuberculosis molecules with known targets. J. Cheminformatics 5: 13 (2013) - 2011
- [j5]Alex M. Clark:
Accurate Specification of Molecular Structures: The Case for Zero-Order Bonds and Explicit Hydrogen Counting. J. Chem. Inf. Model. 51(12): 3149-3157 (2011) - 2010
- [j4]Alex M. Clark:
Basic primitives for molecular diagram sketching. J. Cheminformatics 2: 8 (2010) - [j3]Alex M. Clark:
2D Depiction of Fragment Hierarchies. J. Chem. Inf. Model. 50(1): 37-46 (2010)
2000 – 2009
- 2007
- [j2]Alex M. Clark, Paul Labute:
2D Depiction of Protein-Ligand Complexes. J. Chem. Inf. Model. 47(5): 1933-1944 (2007) - 2006
- [j1]Alex M. Clark, Paul Labute, Martin Santavy:
2D Structure Depiction. J. Chem. Inf. Model. 46(3): 1107-1123 (2006)
Coauthor Index
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